PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20119_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 149aa    MW: 16675 Da    PI: 11.2182
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20119_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP225.92.4e-08119140224
          AP2   2 gykGVrwdkkrgrWvAeIrdpse 24 
                   y+GVr+++ +g+WvAeIr p +
  RrC20119_p1 119 LYRGVRQRH-WGKWVAEIRLPQN 140
                  59******9.*********9844 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.547119149IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-5119144IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-10119144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MEEHNYHFQT NLSPKVSEIR ASLSQIILAG GPNTLDSVFS FLATSSATTS SLDTLNTPPP  60
QLGSSVYLHQ RDLIESFHLQ NRAISTPPPL FSSLSFDHQS SPAAAFAAAL GRTAKRKKLY  120
RGVRQRHWGK WVAEIRLPQN RMRVLVRHL
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013661527.18e-85ethylene-responsive transcription factor ERF061
SwissprotQ9C7W21e-62ERF61_ARATH; Ethylene-responsive transcription factor ERF061
TrEMBLA0A078IAD32e-83A0A078IAD3_BRANA; BnaA09g12290D protein
TrEMBLA0A3P5XXM82e-83A0A3P5XXM8_BRACM; Uncharacterized protein
STRINGBra027736.1-P2e-83(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41742551
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G64380.12e-52ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]