PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC20253_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 55aa MW: 6293.24 Da PI: 11.5383

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC20253_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	107.5	3.7e-33	1	55	247	301
GAGA_bind 247 stkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 ++++r++Ri+grKmS+++f++lL++La+eG+dls pvDLkd+WA+HGtn+++ i+ RrC20253_p1 1 MPNKRHSRIGGRKMSGNVFSRLLSRLAGEGHDLSSPVDLKDYWARHGTNRYIIIK 55 79**************************************************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06217	1.1E-30	1	55	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 55 aa Download sequence Send to blast
MPNKRHSRIG GRKMSGNVFS RLLSRLAGEG HDLSSPVDLK DYWARHGTNR YIIIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189521	2e-58	AC189521.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB091M07, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013598019.1	7e-33	PREDICTED: protein BASIC PENTACYSTEINE5-like isoform X1
Refseq	XP_013706798.1	7e-33	protein BASIC PENTACYSTEINE5 isoform X1
Swissprot	F4JUI3	6e-30	BPC5_ARATH; Protein BASIC PENTACYSTEINE5
TrEMBL	A0A078GAI9	2e-31	A0A078GAI9_BRANA; BnaA06g37280D protein
TrEMBL	A0A0D3DIF6	2e-31	A0A0D3DIF6_BRAOL; Uncharacterized protein
TrEMBL	A0A397Z737	2e-31	A0A397Z737_BRACM; Uncharacterized protein
TrEMBL	A0A3P6F1T2	2e-31	A0A3P6F1T2_BRAOL; Uncharacterized protein
STRING	Bo7g119540.1	4e-32	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM30335	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38910.1	1e-32	basic pentacysteine 5