PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC20261_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 192aa MW: 21671.6 Da PI: 9.4752

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC20261_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	196.7	7.5e-61	7	148	5	154
DUF702 5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelet 102 + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+ + +q +++++ ++++ ++ ++kr re++ +++ ++s + +++t RrC20261_p1 7 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSRK-HQSQTQTQPQQQQLSTTNPKRLREQHPTSSPSSSGVR-------ISTST 96 569*************************************987665.5555556666677788888888886444333333333.......34456 PP DUF702 103 sslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 +P+e+ss a frcv+vss+ddg+e++aYqt+v+igGhvfkGiL++qGle+ RrC20261_p1 97 GYFPAELSSLADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFKGILHYQGLEK 148 77*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.5E-57	7	147	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	2.1E-28	10	51	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	9.5E-30	99	146	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MMMMITGRRC EDCGNQAKKE CVYMRCRTCC KSKAFHCQTH IKSTWVPAYR RSRKHQSQTQ 60 TQPQQQQLST TNPKRLREQH PTSSPSSSGV RISTSTGYFP AELSSLADFR CVKVSSIDDG 120 KEQYAYQTTV NIGGHVFKGI LHYQGLEKVV LDHQPAHHDQ ALLIPSSSSS YPLMITSPFT 180 DFMSGTHTKS LH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC006841	2e-61	AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBank	CP002685	2e-61	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013717020.1	1e-119	protein SHI RELATED SEQUENCE 3-like
Swissprot	Q9SJT8	6e-85	SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBL	A0A078FRX7	1e-118	A0A078FRX7_BRANA; BnaA04g12150D protein
TrEMBL	A0A397ZT16	1e-118	A0A397ZT16_BRACM; Uncharacterized protein
TrEMBL	A0A3P6CQK7	1e-118	A0A3P6CQK7_BRAOL; Uncharacterized protein
STRING	Bo4g145920.1	1e-117	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9188	26	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21400.1	1e-81	SHI-related sequence3