PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2029_p4

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 446aa MW: 49750.6 Da PI: 9.7777

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2029_p4	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	31.7	3.4e-10	140	181	4	45
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L RrC2029_p4 140 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 181 5889*************************8766666655544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.0E-6	137	214	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.289	139	183	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	2.0E-7	140	181	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	5.75E-7	141	183	No hit	No description
CDD	cd14708	2.00E-21	141	193	No hit	No description
Gene3D	G3DSA:1.20.5.170	9.2E-8	142	185	No hit	No description
PROSITE pattern	PS00036	0	144	159	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	3.4E-28	222	297	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MVLQAVKYRS DEAKPLTKKK SKCNDGEFAV FFAGGGATTL EMFPSWPIRT HQSLPTESSK 60 SGGESSDSGS ANFSGKAESQ QLESPMSSKR NHNLMLQHRN NNKVNSSPTS GLPSTSRTPA 120 PPKASEDKMK ATTSGKLLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQE 180 LQRARSQGMF MGGCGPPGPN ITSGAAVFNM EYGRWLEDDN RHISEIRTGL QAHLSDNDLR 240 LIVDSYIIHF DEVFRLKAVA AKADVFHLII GTWMSPAERC FIWMAGFRPS DFIKILVSQM 300 DLLTEQQLMG IYGLQHSSQQ AEEALSQGLE QLQQSLIDTL AASQVIDGMQ QIAVALGKVS 360 NLEGFIRQAD NLRQQTVHQL RRILTVQQAA RCFLVIGEYY GRLRALSSLW LSRPREMEEI 420 NLPSRVFEAG EELAGERVRR HCSALV

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MVLQAVKYRS DEAKPLTKKK SKCNDGEFAV FFAGGGATTL EMFPSWPIRT HQSLPTESSK  60
SGGESSDSGS ANFSGKAESQ QLESPMSSKR NHNLMLQHRN NNKVNSSPTS GLPSTSRTPA  120
PPKASEDKMK ATTSGKLLDA KTLRRLAQNR EAARKSRLRK KAYVQQLESS RIKLSQLEQE  180
LQRARSQGMF MGGCGPPGPN ITSGAAVFNM EYGRWLEDDN RHISEIRTGL QAHLSDNDLR  240
LIVDSYIIHF DEVFRLKAVA AKADVFHLII GTWMSPAERC FIWMAGFRPS DFIKILVSQM  300
DLLTEQQLMG IYGLQHSSQQ AEEALSQGLE QLQQSLIDTL AASQVIDGMQ QIAVALGKVS  360
NLEGFIRQAD NLRQQTVHQL RRILTVQQAA RCFLVIGEYY GRLRALSSLW LSRPREMEEI  420
NLPSRVFEAG EELAGERVRR HCSALV

Functional Description ? help Back to Top
Source	Description
UniProt	Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269\|PubMed:20805327, ECO:0000269\|PubMed:27717447}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by flg22 in leaves. {ECO:0000269\|PubMed:27717447}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ314757	0.0	AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene).
GenBank	HQ132743	0.0	HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490143.1	0.0	PREDICTED: transcription factor TGA2.1-like isoform X1
Refseq	XP_018490144.1	0.0	PREDICTED: transcription factor TGA2.1-like isoform X1
Swissprot	Q93XM6	0.0	TGA9_ARATH; Transcription factor TGA9
TrEMBL	A0A3P6F109	0.0	A0A3P6F109_BRAOL; Uncharacterized protein
STRING	XP_006417705.1	0.0	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5524	24	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	0.0	bZIP family protein

Publications ? help Back to Top
Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] Noshi M,Mori D,Tanabe N,Maruta T,Shigeoka S Arabidopsis clade IV TGA transcription factors, TGA10 and TGA9, are involved in ROS-mediated responses to bacterial PAMP flg22. Plant Sci., 2016. 252: p. 12-21 [PMID:27717447] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]