PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC20335_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 124aa    MW: 14620.6 Da    PI: 8.8431
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC20335_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM561.4e-1716114496
          NAM   4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka..eekewyfFskrdkkya....tgkrknr.atk...sgyWkatgkdke 91 
                  G++F+P d+el++eyL +k+egk+  +   i+  d+y+ ePw L++ + +  +++ewy+F++r + ++     gk+++r +t+   sg Wka  k  +
  RrC20335_p1  16 GIQFQPYDDELINEYLIPKLEGKPRGE---ITMKDVYSKEPWLLDHPMGSffKKNEWYYFVTRTQLSKkkigCGKKAKRkITRdndSGSWKANAK-GD 109
                  99**********************655...9999**********86444444889*****999776553344566777744446669****9877.56 PP

          NAM  92 vlskk 96 
                  +++k+
  RrC20335_p1 110 IKDKE 114
                  66643 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.81E-165119IPR003441NAC domain
PROSITE profilePS5100518.82213124IPR003441NAC domain
PfamPF023653.7E-1016115IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    Send to blast
MYEYNDMYEY NDEDGGIQFQ PYDDELINEY LIPKLEGKPR GEITMKDVYS KEPWLLDHPM  60
GSFFKKNEWY YFVTRTQLSK KKIGCGKKAK RKITRDNDSG SWKANAKGDI KDKETKMVIG  120
NTKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453519.16e-83PREDICTED: uncharacterized protein LOC108824593
RefseqXP_018479483.15e-84PREDICTED: NAC domain-containing protein 35-like
TrEMBLA0A397XK521e-71A0A397XK52_BRACM; Uncharacterized protein
STRINGBo9g135840.12e-71(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26071358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18300.17e-13NAC domain containing protein 88