PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC203_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 242aa    MW: 25616.4 Da    PI: 8.613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC203_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001489111123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ykC+ C+k Fs+   L  H  +H
  RrC203_p1  89 YKCSVCDKAFSSYQALGGHKASH 111
                9***********99999998887 PP
2zf-C2H210.70.0017149168120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++C++C+ksF +   L  H 
  RrC203_p1 149 HVCTICNKSFATGQALGGHK 168
                79********9988776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.37E-1088111No hitNo description
PfamPF139124.7E-1389113IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.5E-489111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.007389111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.65889116IPR007087Zinc finger, C2H2
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SuperFamilySSF576671.37E-10144171No hitNo description
Gene3DG3DSA:3.30.160.601.8E-5147172IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139129.8E-13149173IPR007087Zinc finger, C2H2
SMARTSM003550.081149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.263149176IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055062Biological Processphosphate ion homeostasis
GO:2000280Biological Processregulation of root development
GO:0005634Cellular Componentnucleus
GO:0001047Molecular Functioncore promoter binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 242 aa     Download sequence    Send to blast
MALEALTSPR LASPVPTLFQ DSAVGFHGSK GKRSKRSRSD FDRSLTEDEY IALCLMLLAQ  60
DGDRTRDLDL PSSSSSPPLL PTPTLTTSYK CSVCDKAFSS YQALGGHKAS HRKNSSQTQS  120
SGGDEKSTSS AVTIASHGRG GGGGSVRPHV CTICNKSFAT GQALGGHKRC HYEGKNGGVA  180
SSSLSVSEGV GSTSHVSSGS HHHQHHHRGF DLNIPPIPEF STVNGEEEVM SPMPTTKKLR  240
LE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates root development and phosphate (Pi) acquisition and homeostasis. Probably acts as a repressor of primary root growth and regulates Pi homeostasis through the control of root architecture. {ECO:0000269|PubMed:17631527}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00622PBMTransfer from AT5G04340Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold treatment and during Pi starvation. {ECO:0000269|PubMed:15634197, ECO:0000269|PubMed:17631527}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ8582910.0DQ858291.1 Brassica carinata C2H2 zinc finger protein (ZF2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018442236.11e-135PREDICTED: zinc finger protein ZAT6-like
SwissprotO225331e-103ZAT6_ARATH; Zinc finger protein ZAT6
TrEMBLA0A0D3EHX51e-125A0A0D3EHX5_BRAOL; Uncharacterized protein
STRINGBo9g181170.11e-125(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04340.12e-81zinc finger of Arabidopsis thaliana 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Shi H, et al.
    The Cysteine2/Histidine2-Type Transcription Factor ZINC FINGER OF ARABIDOPSIS THALIANA6 Modulates Biotic and Abiotic Stress Responses by Activating Salicylic Acid-Related Genes and C-REPEAT-BINDING FACTOR Genes in Arabidopsis.
    Plant Physiol., 2014. 165(3): p. 1367-1379
    [PMID:24834923]
  3. Shi H,Chan Z
    The cysteine2/histidine2-type transcription factor ZINC FINGER OF ARABIDOPSIS THALIANA 6-activated C-REPEAT-BINDING FACTOR pathway is essential for melatonin-mediated freezing stress resistance in Arabidopsis.
    J. Pineal Res., 2014. 57(2): p. 185-91
    [PMID:24962049]
  4. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]
  5. Li Y, et al.
    The C2H2 zinc-finger protein SlZF3 regulates AsA synthesis and salt tolerance by interacting with CSN5B.
    Plant Biotechnol. J., 2018. 16(6): p. 1201-1213
    [PMID:29193661]
  6. Kim SY,Hyoung S,So WM,Shin JS
    The novel transcription factor TRP interacts with ZFP5, a trichome initiation-related transcription factor, and negatively regulates trichome initiation through gibberellic acid signaling.
    Plant Mol. Biol., 2018. 96(3): p. 315-326
    [PMID:29335898]
  7. Shi H, et al.
    Zinc finger of Arabidopsis thaliana 6 is involved in melatonin-mediated auxin signaling through interacting INDETERMINATE DOMAIN15 and INDOLE-3-ACETIC ACID 17.
    J. Pineal Res., 2018. 65(2): p. e12494
    [PMID:29607541]
  8. Shi H,Liu G,Wei Y,Chan Z
    The zinc-finger transcription factor ZAT6 is essential for hydrogen peroxide induction of anthocyanin synthesis in Arabidopsis.
    Plant Mol. Biol., 2018. 97(1-2): p. 165-176
    [PMID:29675814]