PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2041_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 343aa    MW: 38925.1 Da    PI: 7.3635
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2041_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like99.52.3e-31206260256
     G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                 +r+rW++eLH++Fv+a+++LGG+++AtPk+i+e+m v+gLt+++vkSHLQkYR++
  RrC2041_p2 206 QRRRWSQELHRKFVDALHSLGGPQVATPKQIREMMRVDGLTNDEVKSHLQKYRMH 260
                 8****************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-27203263IPR009057Homeodomain-like
SuperFamilySSF466894.17E-17203263IPR009057Homeodomain-like
PROSITE profilePS5129411.054203262IPR017930Myb domain
TIGRFAMsTIGR015571.3E-24206260IPR006447Myb domain, plants
PfamPF002495.2E-8207258IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010092Biological Processspecification of organ identity
GO:0010629Biological Processnegative regulation of gene expression
GO:0048449Biological Processfloral organ formation
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MVQTDTDKMG LNLNLSMYSL AKPLSQFLDQ VSRIKDHDSK LSEIDDYVGK LEEERRKIDV  60
FKRELPLCML LLNEAIERLK EEASSVMMMA SNGKLDVGEG VILESDNNKK NWMSSAQLWI  120
SNPNSQLQST NEEEDGCVTQ KPIQTCNNQG GAFPPPYNPP PPPPPAPLSL RTPTSEILMD  180
YRRIEQNHPQ FSKPIIQSHH VPKKDQRRRW SQELHRKFVD ALHSLGGPQV ATPKQIREMM  240
RVDGLTNDEV KSHLQKYRMH IRKHPLHPAK TLPSSDQAVL LDRETQSLIS LTRSDSPQSP  300
LVVDRGCLFS NNGHSSEDEV KSDGRSSWKS VSNKNRPALD LEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A6e-14207258354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B6e-14207258354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C6e-14207258354Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D6e-14207258354Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-14207258455Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1201207PKKDQRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that functions with ULT1 in a pathway which regulates floral meristem homeostasis and organ number in the flower. Binds specifically to the DNA sequence motif 5'-GTAGATTCCT-3' of WUS promoter, and may be involved in direct regulation of WUS expression. Binds specifically to the DNA sequence motif 5'-AAGAATCTTT-3' found in the promoters of AG and the NAC domain genes CUC1, CUC2 and CUC3, and may be involved in direct regulation of these gene expressions.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00475DAPTransfer from AT4G37180Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018453470.10.0PREDICTED: myb family transcription factor EFM
RefseqXP_018453831.10.0PREDICTED: myb family transcription factor EFM-like
SwissprotF4JRB01e-159HHO5_ARATH; Transcription factor HHO5
TrEMBLA0A398AHG20.0A0A398AHG2_BRACM; Uncharacterized protein
STRINGBo1g005280.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM49222652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37180.11e-164G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Nagarajan VK,Satheesh V,Poling MD,Raghothama KG,Jain A
    Arabidopsis MYB-Related HHO2 Exerts a Regulatory Influence on a Subset of Root Traits and Genes Governing Phosphate Homeostasis.
    Plant Cell Physiol., 2016. 57(6): p. 1142-52
    [PMID:27016098]