PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2055_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 213aa    MW: 24350.2 Da    PI: 10.4649
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2055_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.71.3e-221864248
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                +ie +s rqv fskRr+g++KKA+EL++LC++eva+i+fs+  k + 
  RrC2055_p5 18 KIEKESHRQVAFSKRRAGLFKKASELCTLCGVEVAIIVFSPAKKAFS 64
                69**************************************9988665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.8E-29968IPR002100Transcription factor, MADS-box
PROSITE profilePS5006623.422969IPR002100Transcription factor, MADS-box
CDDcd002654.08E-321086No hitNo description
SuperFamilySSF554556.8E-281092IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-171131IPR002100Transcription factor, MADS-box
PfamPF003196.2E-251865IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-173146IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-174667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTSKKKGSTG RQRIRMAKIE KESHRQVAFS KRRAGLFKKA SELCTLCGVE VAIIVFSPAK  60
KAFSFGHPNV YTVLDRYKNN TSFQQQSQPL ENTETRSELT LVLSQVEEEK KKGEAMRKSS  120
EMAKWSVEEM SLLQLQEMRS ALEELRDTMV VPPSYMNTMS TAFYNSRYMG VQLGMSYKAM  180
LDHEWLRAVI RPLPREGGNR CSVKPASRIA LRL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. {ECO:0000269|PubMed:18599653, ECO:0000269|PubMed:18713950}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894387e-34AC189438.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069F08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018436048.11e-113PREDICTED: agamous-like MADS-box protein AGL61
SwissprotQ4PSU44e-56AGL61_ARATH; Agamous-like MADS-box protein AGL61
TrEMBLA0A397Y5G32e-97A0A397Y5G3_BRACM; Uncharacterized protein
STRINGBra026764.1-P9e-87(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-58AGAMOUS-like 61
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]