PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC20592_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 208aa MW: 21746 Da PI: 10.666

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC20592_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	29.8	1.3e-09	1	22	41	62
zf-Dof 41 tkGGalrnvPvGggrrknkkss 62 t+GGalrnvPvGgg+r+nkk++ RrC20592_p1 1 THGGALRNVPVGGGCRRNKKAK 22 8******************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	7.0E-4	1	19	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
THGGALRNVP VGGGCRRNKK AKTGNSKSAS SQTKQSASMV NAPSPTNIQL QTNSQLPFLP 60 TLQNLTQLGG IGLNLAAING NSVGNSNTSS SFFNDLGFYH GANTSGSVMA NNNNENNIMT 120 SLGSASHFAM LDRSMGLYSF PNEGNMVLSS STASRVSQTA PVKREETHVG SISRPVSGLT 180 SAGNQSNQYW PGLSLPGSSS NDRQQHLM

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478156.1	1e-145	PREDICTED: dof zinc finger protein DOF2.2 isoform X2
Swissprot	Q9ZV33	8e-89	DOF22_ARATH; Dof zinc finger protein DOF2.2
TrEMBL	A0A3N6SB75	1e-126	A0A3N6SB75_BRACR; Uncharacterized protein
STRING	Bo4g166830.1	1e-124	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5336	17	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28810.2	1e-78	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]