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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
RrC20605_p1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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| Family |
SRS |
| Protein Properties |
Length: 222aa MW: 24806.5 Da PI: 7.6281 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| RrC20605_p1 | genome | MSU | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 181.8 | 2.9e-56 | 67 | 209 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskke 99
rs t+sCqdCGnqakk+C+h+RCRtCCks+g+dC thv+stW+paakrrerqqq+ + + + + + + s l+ + + e
RrC20605_p1 67 RSVTISCQDCGNQAKKGCTHMRCRTCCKSQGLDCPTHVRSTWIPAAKRRERQQQQIETPTANRNGRGCVV----------GNIPKRSWDLPATLDSPE 154
67899**********************************************9888765444433332222..........233333445555555567 PP
DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+ +++Peevs++a+frcvr+s+ ddge ++aYqt+v i+GhvfkGiLy qG+e+
RrC20605_p1 155 MGETTFPEEVSTDALFRCVRMSGTDDGEGQFAYQTTVGIAGHVFKGILYSQGPES 209
78888************************************************86 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 222 aa
Download sequence Send
to blast |
MAGVGSSRNN EEDNQHKTNW LWYRNTVSSN TSHSNQHPIC QQQIWQQQSL DLYPGQINVC 60
DVNTSSRSVT ISCQDCGNQA KKGCTHMRCR TCCKSQGLDC PTHVRSTWIP AAKRRERQQQ 120
QIETPTANRN GRGCVVGNIP KRSWDLPATL DSPEMGETTF PEEVSTDALF RCVRMSGTDD 180
GEGQFAYQTT VGIAGHVFKG ILYSQGPESM PGTQFYENPL RS
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
