PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2096_p5
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 331aa    MW: 38293.1 Da    PI: 9.0826
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2096_p5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.77.2e-1921581350
                HHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF 13 fskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                ++ Rr+ ++KKA+ELS+LC++ev+vi+++s g+l++++
  RrC2096_p5 21 LASRRENVFKKASELSILCGVEVCVIYYGSYGELKTWP 58
                567**********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0067160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.5632161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-162290IPR002100Transcription factor, MADS-box
PRINTSPR004046.4E-52338IPR002100Transcription factor, MADS-box
PfamPF003191.9E-122457IPR002100Transcription factor, MADS-box
CDDcd002665.99E-172482No hitNo description
PRINTSPR004046.4E-53859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MASSSSSSHF KKPSSSEAKR LASRRENVFK KASELSILCG VEVCVIYYGS YGELKTWPAD  60
REKVKDMVRR YSELSEAQRS KKQYDLRKVL ESIKKDDESK KKKKKTKKRA KLGSHYKYPD  120
WDRRFDNYSA EQLEELIVSL EHSQTMMRHR LGAVVEAQTQ RSMHYINMAR QEQMMIQQRP  180
NQASMDLFNP RISNLPQSQG STSASNQAYS LAPVPDPLTI YQDPCMEEMY SRLLGSQETG  240
MNEVFNTSMF PYNSFNSNCV NVLPNQLYQN CFNVNDPYGV QETGTNGLQQ NMDMYGYNSN  300
TNGYPHQIFQ TPSVYQYMDR STQDVKPLYQ I
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
199107KKKKKKTKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305|PubMed:26462908}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488247.10.0PREDICTED: agamous-like MADS-box protein AGL103
SwissprotQ9LSB22e-72AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBLA0A0D3BC091e-144A0A0D3BC09_BRAOL; Uncharacterized protein
STRINGBo3g071680.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM56620126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18650.11e-66AGAMOUS-like 103
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]