PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC21122_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 76aa MW: 8746.43 Da PI: 11.8157

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC21122_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	95.8	3.3e-30	13	62	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ RrC21122_p1 13 PRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQ 62 9************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.2E-15	10	63	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.7E-26	11	62	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-22	13	63	IPR006447	Myb domain, plants
Pfam	PF00249	1.7E-7	14	62	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 76 aa Download sequence Send to blast
MPRFPAKRSM RAPRMRWTTT LHARFVHAVE LLGGHERATP KSVLELMDVK DLTLAHVKSH 60 LQLILITSPV SMYLTR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	9e-17	14	62	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-17	14	62	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-17	14	62	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-17	14	62	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	9e-17	14	62	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269\|PubMed:11525739, ECO:0000269\|PubMed:15286295, ECO:0000269\|PubMed:16623911, ECO:0000269\|PubMed:17307928}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493491	5e-66	AB493491.1 Arabidopsis thaliana At1g32240 mRNA for hypothetical protein, partial cds, clone: RAAt1g32240.
GenBank	AY048689	5e-66	AY048689.1 Arabidopsis thaliana GARP-like putative transcription factor KANADI2 (KAN2) mRNA, complete cds.
GenBank	BT029211	5e-66	BT029211.1 Arabidopsis thaliana At1g32240 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001322280.1	1e-36	Homeodomain-like superfamily protein
Refseq	XP_018487391.1	1e-36	PREDICTED: probable transcription factor KAN2
Refseq	XP_022756956.1	1e-36	probable transcription factor KAN2 isoform X3
Swissprot	Q9C616	1e-37	KAN2_ARATH; Probable transcription factor KAN2
TrEMBL	A0A178WBD6	2e-36	A0A178WBD6_ARATH; KAN2
STRING	Bo8g030100.1	6e-37	(Brassica oleracea)
STRING	GSMUA_Achr2P18070_001	2e-36	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5387	28	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32240.1	5e-40	G2-like family protein

Publications ? help Back to Top
Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis. Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71 [PMID:26108442]