PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC212_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Nin-like
Protein Properties Length: 248aa    MW: 28856.7 Da    PI: 4.9457
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC212_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK72.46e-23127175351
     RWP-RK   3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 
                k +s e++s y+++pi++AAkeL+++lT+LK++CR +GI+RWPhRk  s
  RrC212_p3 127 KPMSKETISLYYDMPIAQAAKELNIGLTLLKKKCRDFGIQRWPHRKRMS 175
                66899*****************************************776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.416107196IPR003035RWP-RK domain
PfamPF020429.1E-19129176IPR003035RWP-RK domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MMMNSFSNLE CDEVFGKEDK SFSFLEYFSY QSEFTNDFFG LEDEIISSGN YDYYLPSASS  60
FLALPDLEPI SIVSHEDLLN EYGSVSLTER ESMFDEDKVE DFDLVKSTET VKKRGREECA  120
HSSSVAKPMS KETISLYYDM PIAQAAKELN IGLTLLKKKC RDFGIQRWPH RKRMSLRNLI  180
KNYEEKLEKG EGNADEISNV LEKLEKELKM TEEFPDLQFE DKTKRLRQAC FKANHKIKRR  240
LVMSKSTT
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018448256.11e-167PREDICTED: protein RKD1
SwissprotQ9M9U95e-94RKD1_ARATH; Protein RKD1
TrEMBLA0A0D3DQ951e-144A0A0D3DQ95_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FTF01e-144A0A3P6FTF0_BRAOL; Uncharacterized protein
STRINGBo8g068090.11e-145(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39662356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G18790.13e-90RWP-RK domain-containing protein