PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21530_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 236aa    MW: 26466.4 Da    PI: 3.9905
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21530_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.52.1e-17431291794
                  E--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3  17 vlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                  +l ++f+++          +++ + +kt +l+ + g +W+v ++ ++  +++++++GW +Fvk+n+L +gDf++F ++g++ fe  +
  RrC21530_p1  43 RLDRPFIASQrlipisyydELPRHLPKTAILQGTGGCVWKVGMTLKQEEEEVYFEQGWPNFVKDNDLVDGDFMTFVYNGDNVFEVSI 129
                  55566666666666666777778899*****************9999999****************************999996554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086312.49238133IPR003340B3 DNA binding domain
SMARTSM010195.6E-1244133IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-1844135IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-1851135IPR015300DNA-binding pseudobarrel domain
PfamPF023621.7E-1353127IPR003340B3 DNA binding domain
CDDcd100177.12E-1655130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MGNEEYELAM KDKIASLLIV LEPSQCNSVL CVLLSQESNT NTRLDRPFIA SQRLIPISYY  60
DELPRHLPKT AILQGTGGCV WKVGMTLKQE EEEVYFEQGW PNFVKDNDLV DGDFMTFVYN  120
GDNVFEVSIY GLDGCKQARA VAELEDDEEE EEEEEDSICA LSSDGTEDTV QRSTDKGKAK  180
VGAVDEEEDS VYSLNNIKDA DTGSSSEFEM ANTILRSKNK GFSDKNRLLA FFSFII
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462061.11e-107PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
RefseqXP_018462062.11e-107PREDICTED: B3 domain-containing protein At4g34400-like isoform X2
SwissprotQ9M8K29e-35REM21_ARATH; B3 domain-containing protein REM21
TrEMBLM4DPT92e-84M4DPT9_BRARP; Uncharacterized protein
STRINGBra018530.1-P4e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.11e-34B3 family protein