PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21587_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 170aa    MW: 18700.8 Da    PI: 4.8608
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21587_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY59.37.3e-19138169233
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCp 33 
                  +Dgy WrKYGqK+vk+se+prsY++Ct+++C 
  RrC21587_p1 138 NDGYGWRKYGQKQVKKSENPRSYFKCTFPNCV 169
                  8******************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.4E-15133168IPR003657WRKY domain
SuperFamilySSF1182906.54E-15134169IPR003657WRKY domain
SMARTSM007742.8E-7137170IPR003657WRKY domain
PfamPF031067.5E-13138168IPR003657WRKY domain
PROSITE profilePS5081115.342138170IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MSSTSFTDLL ASSGVDCYEQ GEDFLGGFYP ETTGSGLPKF KTAQPPPLPI SQPPQNFAFS  60
SELLDSPLLL SSSHSLISPT TGAFPFPWQI QSQSQPPNAA SEETYGVQDL QKKQDPVPPP  120
CEFADRVPSY MVVSRNSNDG YGWRKYGQKQ VKKSENPRSY FKCTFPNCVS
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9123961e-93EU912396.1 Brassica napus WRKY25-1 transcription factor (WRKY25-1) mRNA, complete cds.
GenBankKM5931461e-93KM593146.1 Brassica oleracea var. capitata WRKY transcription factor (WRKY51) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478533.15e-87PREDICTED: probable WRKY transcription factor 25
SwissprotO229212e-65WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLM4DYM74e-85M4DYM7_BRARP; Uncharacterized protein
STRINGBra021623.1-P6e-86(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.12e-56WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]