PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC216_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 1707aa    MW: 189160 Da    PI: 5.2961
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC216_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.54.2e-07351398354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +  rE+ RR+++N+ f eL  +l +      +K++Ka+iL+ + + +k+L
  RrC216_p2 351 SQKAGREKLRREKLNEHFVELGNVLDPE----RPKNDKATILTDTLQLLKDL 398
                566779******************9987....69***********9999988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
HamapMF_0303849.6617351IPR028601Cytosolic Fe-S cluster assembly factor NUBP1/Nbp35
SuperFamilySSF525401.12E-5145242IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3002.5E-10151240IPR027417P-loop containing nucleoside triphosphate hydrolase
HamapMF_0204035.70553403IPR019591Mrp/NBP35 ATP-binding protein
PfamPF106094.5E-8058255IPR019591Mrp/NBP35 ATP-binding protein
CDDcd020378.76E-8261311No hitNo description
PROSITE patternPS012150166182IPR000808Mrp, conserved site
Gene3DG3DSA:3.40.50.3002.5E-101277326IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.12E-51279325IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS5088812.773348398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-10348420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.32E-11348413IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.86E-6349402No hitNo description
PfamPF000106.3E-5350398IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.1E-5354404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF483711.5E-5665808IPR016024Armadillo-type fold
Gene3DG3DSA:1.25.10.105.3E-4681809IPR011989Armadillo-like helical
SuperFamilySSF483711.5E-5839963IPR016024Armadillo-type fold
SuperFamilySSF483711.5E-510321130IPR016024Armadillo-type fold
SuperFamilySSF483711.5E-511781220IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016226Biological Processiron-sulfur cluster assembly
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
GO:0051539Molecular Function4 iron, 4 sulfur cluster binding
Sequence ? help Back to Top
Protein Sequence    Length: 1707 aa     Download sequence    Send to blast
MDNGEIPENA NEHCPGPQSE TAGKSDSCAG CPNQEVCATA PKGPDPDLVA VAERMSTVKH  60
KILVLSGKGG VGKSTFSAQL SFALAGMDHQ VGLMDIDICG PSMPKMLGLE GHEIHQSNLG  120
WSPVYVEDNL GVMSIGFMLP NSDEAVVWRG PRKNALIKQF LKDVYWGEID YLVVDAPPGT  180
SDEHISIVQY LQATGIDGAI IVTTPQEVSL IDVRKEVSFC KKVGVPVLGV VENMSGLCQP  240
LADVKFKKVH SESGSSVVDV TEEVISCLRK NAPELVNVLV YSEVFDRSGG GAERMCREMG  300
VPFLGSVPLD PQLCRAAEQG KSCFEESVTA ILLFFCSSFE RRVMDVSARK SQKAGREKLR  360
REKLNEHFVE LGNVLDPERP KNDKATILTD TLQLLKDLTS EVTKLKSEYT ALTDESREVN  420
IFSPLTQEKN DLREEKTSLK SDIENLNLQY QQRLRSMSPW GAAMDHTVMM APPPSFPYPM  480
PMAMPPGSIP MHHHPPMPSY TYFGNQNPSM MPAPYMPYMQ PPNTVVEQQS VHIPQNNRSR  540
EPRTKVSRES RSDKAEDSND VATQLELKTP GSTSDKDTLQ RPEKSKRCKR NSNNNNSVEE  600
SSHSSNMTTP PARPLSANDW DVLIEDFQDS GAPRDWFTSV FSTDSLADLA LSSLLKKDLP  660
LPSKLSILVF LDEFSDTLFA GRGDETFDRL VDALRAIVQS PTADGLKEQA LISFSSVLAA  720
SVESSLSLRH VEAVVDLLLA LVNRPNHGFD RQARAVACEC LRQLERAFPG LLSEVAGHLW  780
SLCQAERTHA VQAYLLLFTT VVYNVVNKKL RVSLLSTSVP LVPFNAPNWM RDQSQSQGLG  840
PDQKELRRTL AFLLESPYLF TSCAMMEFMG MVVPLASALE LQASMLKVQF LGMVYSFDPM  900
LCHVVLLMYT KFPDAFEGQE KDIMRRLLLL SKETQVYLVF RLLALHWLMG LLSGEVVKRK  960
SVLEMGQKFR PGVFDPLGLK ALKLDLLVQC SVGLSGKSSG ELLQECLVSV SDFKWLPPWS  1020
SETGVAFRTL HKFLISASTH SDSDPSTTRS LMESSLFQNL QGLLVDMTSE FQILVPVVVS  1080
FIERLINCEK HQWLGERFLQ TIDEKLLPKL EKSCLLTPYF PLFHRIAEND TIPPSRLIAL  1140
LTKFVLTLVD KRGFDVGLRL WDQGTEVLGV CRTLLSHHKS SRLFLGLSRL LSLICLYFPD  1200
LDVRDNARIY LRMLVCIPGR RLKNILKPAD TVSPSTHSSA AFFTVQSPRF RYDPNKSWNI  1260
SSYIHFERVT SLLVKQSWSL SLPSSLGVGS SIIESKVQVD EVEPESSQEL QLLPENSRRI  1320
ESGKATLRVM DAKVGEILER LRRYFSVVPD LRHMPGIKVR INCSLRLDAE PYSSVWGSQT  1380
QSPELDNKVE AAPPALFATV VKFSSSAPYG SIPSCRIPFL LGEWDKNVPN DEGSLEIVLL  1440
GNTTIEEEKD GLGGGGGGAS VTVELEPREP TPGLVEVSME ANAESGQMIQ GKLESVPVGI  1500
EDMFLKALAP PDESEDTIPS YYADLFSALW EVCGSSSSTA HETFALKGGK TAAAISGTRS  1560
VKLLEVHAET VVQASELHLA PFVVAITGEQ LVNIVREGGI IENIVWREEE EGEERGQGTA  1620
SSSMGATGTN RDPLRLTYIG YGDDQEVPMS RSRGKLGKIK MLMFLPPRYH LLFEMEVGEE  1680
STLVHIRTDY WPCLAYVDDY LEALFLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6g2g_A2e-67553213243Cytosolic Fe-S cluster assembly factor CFD1
6g2g_B2e-67553213243Cytosolic Fe-S cluster assembly factor CFD1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018441024.10.0PREDICTED: LOW QUALITY PROTEIN: AP-5 complex subunit beta-1
TrEMBLA0A3P6FVS50.0A0A3P6FVS5_BRAOL; Uncharacterized protein
STRINGBra038237.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1130422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19860.21e-100bHLH family protein