PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2178_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Nin-like

Protein Properties

Length: 232aa MW: 27194.9 Da PI: 7.4305

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2178_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	81.1	1.1e-25	121	171	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++++l++++kyF+ pi +AAkeL+v+lTvLK++CR++ I RWPhRk+ksl RrC2178_p1 121 QDKLELSEIRKYFDRPIMKAAKELNVGLTVLKKRCRELEIYRWPHRKLKSL 171 6799*********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.075	107	193	IPR003035	RWP-RK domain
Pfam	PF02042	1.3E-21	124	171	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009793	Biological Process	embryo development ending in seed dormancy
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 232 aa Download sequence Send to blast
MDPNSLQPLD SMKIENQYEP DSLFDVLEKL PPLDSLLDTE YLKPDSGLRF EYQYNSFEDF 60 FENIEVNNTI SSDILMLTQE PYFSSDSPSP LAIQNNHCPG TNERGEKKTP KNRNTRIKRR 120 QDKLELSEIR KYFDRPIMKA AKELNVGLTV LKKRCRELEI YRWPHRKLKS LNSLIYNLKG 180 VGMDEEVKNL EEHRVLIEQE PDAELTDGTK KLRQACFKAK YKRKKSLAND GY

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018455880.1	1e-168	PREDICTED: protein RKD4
Swissprot	Q9LVU8	1e-112	RKD4_ARATH; Protein RKD4
TrEMBL	A0A078IEW6	1e-155	A0A078IEW6_BRANA; BnaA10g06400D protein
TrEMBL	A0A397XRA8	1e-155	A0A397XRA8_BRACM; Uncharacterized protein
TrEMBL	M4CFV6	1e-155	M4CFV6_BRARP; Uncharacterized protein
STRING	Bra003088.1-P	1e-156	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12585	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53040.1	1e-115	RWP-RK domain-containing protein

Publications ? help Back to Top
Azpeitia E,Davila-Velderrain J,Villarreal C,Alvarez-Buylla ER Gene regulatory network models for floral organ determination. Methods Mol. Biol., 2014. 1110: p. 441-69 [PMID:24395275]