PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2183_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 238aa    MW: 26864 Da    PI: 6.0558
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2183_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.51.8e-18169202134
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                 Cs+Cgt +Tp+WR gp g+ktLCnaCG+++++ +
  RrC2183_p3 169 CSHCGTNNTPQWRTGPVGPKTLCNACGVRFKSGR 202
                 *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.6E-7010238IPR016679Transcription factor, GATA, plant
SMARTSM004019.9E-16163213IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.13E-15166226No hitNo description
Gene3DG3DSA:3.30.50.105.4E-14167200IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011411.952167199IPR000679Zinc finger, GATA-type
CDDcd002025.51E-15168225No hitNo description
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003204.2E-16169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MELWTEARAL KASLRGEAIK NQVSVSSEEL SRTSSAEDFS VECFLDFSEE VQEEEELVSV  60
TSSQEEHGQD CCIFSSQPCI FDQLPSLPDE YVEELEWVSR VVDDCSSPEV SLLFTQTHKT  120
KPSFSSSIPV KPRTKRSRSS VTGDRVWPRT GEQGRKKKQE TAVAFQRRCS HCGTNNTPQW  180
RTGPVGPKTL CNACGVRFKS GRLCPEYRPA DSPTFSTEIH SNLHRKVLEL RKSKELVE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: In leaves, less expressed in dark than in light. {ECO:0000269|PubMed:12139008}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3527711e-130AK352771.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-03-P20.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477271.11e-160PREDICTED: GATA transcription factor 3-like isoform X1
RefseqXP_018477272.11e-160PREDICTED: GATA transcription factor 3-like isoform X1
RefseqXP_018477273.11e-160PREDICTED: GATA transcription factor 3-like isoform X1
SwissprotQ8L4M61e-125GATA3_ARATH; GATA transcription factor 3
TrEMBLA0A078I5Y41e-155A0A078I5Y4_BRANA; GATA transcription factor
TrEMBLA0A3P6A4J11e-155A0A3P6A4J1_BRACM; GATA transcription factor
TrEMBLM4DMD71e-155M4DMD7_BRARP; GATA transcription factor
STRINGBra017670.1-P1e-156(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM57392647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34680.21e-118GATA transcription factor 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]