PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21868_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 169aa    MW: 19133.1 Da    PI: 4.3664
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21868_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM271.3e-0810545094
          NAM 50 kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94
                 ++k+++  wyfFs + + y++ ++++ +t sgyWk tgk+ +  +
  RrC21868_p1 10 RIKSRDLAWYFFSDTGSLYRNTNKQSLTTPSGYWKITGKTAQTSH 54
                 6777888**************999999***********9876554 PP
2NAM28.25.5e-09127169548
          NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp 48 
                  f  +Ptd+el+ +yL++++ g+   + e+i +v++y+++PwdLp
  RrC21868_p1 127 FNVRPTDDELIEHYLRNRLIGQLGLV-EAIGDVKVYDFDPWDLP 169
                  5678**************99998555.89**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS510059.2621129IPR003441NAC domain
SuperFamilySSF1019411.44E-81150IPR003441NAC domain
PROSITE profilePS5100514.519123169IPR003441NAC domain
SuperFamilySSF1019414.71E-10127169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MLQLHKALSR IKSRDLAWYF FSDTGSLYRN TNKQSLTTPS GYWKITGKTA QTSHVVCKVE  60
YIGPADSLQI AGESTSERTA ESLQIAGEST SERPAESLQI ANEDGYSDSY WEGNVNTNED  120
WDTYLVFNVR PTDDELIEHY LRNRLIGQLG LVEAIGDVKV YDFDPWDLP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018466716.11e-66PREDICTED: NAC domain-containing protein 68-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2893923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G29035.11e-09NAC domain containing protein 3