PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21904_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 58aa    MW: 6713.57 Da    PI: 4.4629
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21904_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57331.45.1e-10955348
       DUF573  3 fqrlwseeDeivlLqGlidfkaktgkspsddida.fyefvkksisfk 48
                 ++  w+++De+++L  ++d++++t+ s  ++ da fy +vk+ i+++
  RrC21904_p1  9 SKINWTKDDELIILGSIVDYEKETKLSHRSERDAlFYGYVKDFIEAE 55
                 5667**********************988887764899***999886 PP
Sequence ? help Back to Top
Protein Sequence    Length: 58 aa     Download sequence    Send to blast
MPLSFSSNSK INWTKDDELI ILGSIVDYEK ETKLSHRSER DALFYGYVKD FIEAELLG
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Involved in stress responses (PubMed:21875893). Plays a repressive role in cell expansion by counteracting the positive role of CPR5 in this process, but does not regulate cell proliferation or endoreduplication (PubMed:21875893). {ECO:0000269|PubMed:21875893}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009124451.16e-24PREDICTED: GLABROUS1 enhancer-binding protein-like 3, partial
SwissprotQ9SJM43e-14STKLI_ARATH; GLABROUS1 enhancer-binding protein-like 3
TrEMBLA0A3P6CR442e-21A0A3P6CR44_BRAOL; Uncharacterized protein (Fragment)
STRINGBo4g186180.12e-21(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.11e-16DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]
  2. Nietzsche M, et al.
    STOREKEEPER RELATED1/G-Element Binding Protein (STKR1) Interacts with Protein Kinase SnRK1.
    Plant Physiol., 2018. 176(2): p. 1773-1792
    [PMID:29192025]