PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21993_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 526aa    MW: 58097.8 Da    PI: 6.2403
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21993_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS383.62.4e-1171485191374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+e+L+e A+avs+gd++ a  ++  l++++s +g+p+qRl ay++e+L+arl +s+ ++y+al+++e +     e ++++ +++e++P+ kf++ + 
  RrC21993_p1 148 LKEVLMEGARAVSDGDFATACGFIDVLEQMVSVSGTPVQRLGAYMAEGLRARLEGSGGNIYRALKCNEPT---GRELMSYMGVLYEICPYWKFAYTAS 242
                  5789*****************************************************************9...99999999***************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N aIlea++g++++H+iDf+i qG Q++ L+++La+Rp+g+p lR+Tgv++++s   +   l  +ge+Lak+Ae++gvpfef+  ++ +  +++ e+L
  RrC21993_p1 243 NAAILEATAGDSKIHVIDFQIAQGSQYMFLIHELAKRPGGAPLLRVTGVDDSQSRyaRGGGLGLVGEKLAKMAESCGVPFEFRD-AVMSGCKVHREHL 339
                  ***************************************************999899999************************.788899999**** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls.PkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291
                   v+pg a++Vn+ + lh+++desvs+e++rd++L+l+ksl  P++v++veqe+++n+++Fl rf+e+l+yy+a+f+s++a  pr++++ri+ E+++++
  RrC21993_p1 340 GVEPGFAVVVNFPYVLHHMPDESVSVENHRDRLLHLIKSLGpPRLVTLVEQESNTNTSPFLSRFAETLDYYTAMFESIDAARPRDDRQRISAEQQCVA 437
                  ****************************************8469****************************************************** PP

         GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  r+ivn++ace++er+erhe l+kWr r+++aGF   p+s + a  a+ +l+ ++++ y++  ++g+l+l Wk+rp+ ++SaW+
  RrC21993_p1 438 RDIVNMIACEERERVERHEVLGKWRVRMMMAGFVGWPVSRSSAFAASEMLKGYDKN-YKLGGSEGALYLFWKRRPMATCSAWK 519
                  ******************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.405122500IPR005202Transcription factor GRAS
PfamPF035148.3E-115148519IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 526 aa     Download sequence    Send to blast
MQTSQKHHTA AGLHMLYPQS HCSPQFQMID NNNNNGSSKE SFFTLESSGP LPSYDSPSVS  60
ITSARTPFSP HSCISDPHPS PENVYGSPLS AASSYAYDEA GIKSKIRELE DSLLSGDPKV  120
EEYSGFSPAA GKSWNWDELL ALTPQLDLKE VLMEGARAVS DGDFATACGF IDVLEQMVSV  180
SGTPVQRLGA YMAEGLRARL EGSGGNIYRA LKCNEPTGRE LMSYMGVLYE ICPYWKFAYT  240
ASNAAILEAT AGDSKIHVID FQIAQGSQYM FLIHELAKRP GGAPLLRVTG VDDSQSRYAR  300
GGGLGLVGEK LAKMAESCGV PFEFRDAVMS GCKVHREHLG VEPGFAVVVN FPYVLHHMPD  360
ESVSVENHRD RLLHLIKSLG PPRLVTLVEQ ESNTNTSPFL SRFAETLDYY TAMFESIDAA  420
RPRDDRQRIS AEQQCVARDI VNMIACEERE RVERHEVLGK WRVRMMMAGF VGWPVSRSSA  480
FAASEMLKGY DKNYKLGGSE GALYLFWKRR PMATCSAWKP NPNQIV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-5218151936375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018451178.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_018451179.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A3N6R9V40.0A0A3N6R9V4_BRACR; Uncharacterized protein
STRINGBo8g047170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13