PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC21_p8
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 461aa    MW: 51688.3 Da    PI: 5.1337
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC21_p8genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS115.19.2e-361282462123
      GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaI 102
               + +L+ecA+av+++d +++++l+++l++++s +g+p+qRl ay++e+L arla+s+s++y+ l++++ +     e l+++++++e++P++kf++  aN aI
  RrC21_p8 128 IGTLYECAKAVENHDVAMTDWLISQLQQMVSVSGEPVQRLGAYLLEGLIARLASSGSTIYRELRCKDPT---GPELLTYMHILYEACPYFKFGYESANGAI 225
               5689****************************************************************9...9**************************** PP

      GRAS 103 leavegeervHiiDfdisqGl 123
                eav++e+ vHiiDf+isqG+
  RrC21_p8 226 AEAVKNESSVHIIDFQISQGG 246
               *******************95 PP
2GRAS260.36.9e-80247461158374
      GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfl 258
               le +g+rL k+Ae  gvpfef+  +a  ++++e+e+L v+ gEalaVn+ l lh+++desv++e++rd++L+lvk+lsPkvv++veqea++n+++Fl rf+
  RrC21_p8 247 LELVGHRLGKLAEMHGVPFEFRG-AALCCTEVEVEKLGVRDGEALAVNFPLVLHHMPDESVTVENHRDRLLRLVKRLSPKVVTLVEQEANTNTAPFLPRFV 346
               789********************.899************************************************************************** PP

      GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
               e++++y a+f+s+++kl+r+++eri+vE+++l+re+vn+vaceg er+erhe l+kWr+r+++aGF+p+pls+++++++k ll+ ++++ y++ee++g+l+
  RrC21_p8 347 ETMRHYLAVFESVDVKLGRDHKERINVEQHCLAREVVNLVACEGVEREERHEPLGKWRSRFRMAGFEPYPLSSYVNATIKGLLESYSEK-YTLEERDGALY 446
               ***************************************************************************************65.*********** PP

      GRAS 360 lgWkdrpLvsvSaWr 374
               lgWk++pLv+ +aWr
  RrC21_p8 447 LGWKNQPLVTSCAWR 461
               **************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.044101442IPR005202Transcription factor GRAS
PfamPF035143.2E-33128246IPR005202Transcription factor GRAS
PfamPF035142.4E-77247461IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MFYHQPSSVQ QMNLSLQTFD SYCTLESSSG PTSHPCPDNT TSSTTSFSSN GSPVSQANNN  60
NSPLSGSSAT NNNETELSLM LKDLETAMME PELDNNSFNG YEFRQQQQQQ YRAVSSAMEM  120
MISKGDLIGT LYECAKAVEN HDVAMTDWLI SQLQQMVSVS GEPVQRLGAY LLEGLIARLA  180
SSGSTIYREL RCKDPTGPEL LTYMHILYEA CPYFKFGYES ANGAIAEAVK NESSVHIIDF  240
QISQGGLELV GHRLGKLAEM HGVPFEFRGA ALCCTEVEVE KLGVRDGEAL AVNFPLVLHH  300
MPDESVTVEN HRDRLLRLVK RLSPKVVTLV EQEANTNTAP FLPRFVETMR HYLAVFESVD  360
VKLGRDHKER INVEQHCLAR EVVNLVACEG VEREERHEPL GKWRSRFRMA GFEPYPLSSY  420
VNATIKGLLE SYSEKYTLEE RDGALYLGWK NQPLVTSCAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-451274614375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018486508.10.0PREDICTED: scarecrow-like protein 5
SwissprotQ8H1250.0SCL5_ARATH; Scarecrow-like protein 5
TrEMBLA0A0D3CPS90.0A0A0D3CPS9_BRAOL; Uncharacterized protein
STRINGBo6g022330.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62128141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.10.0scarecrow-like 5
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]