PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2221_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 318aa    MW: 36022.5 Da    PI: 5.1747
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2221_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like98.93.6e-311064155
     G2-like  1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                kprl+Wt+eLH+ F+eav+qLGG++kAtPk ++++m+++gLtl+h+kSHLQkYRl
  RrC2221_p4 10 KPRLKWTCELHHIFIEAVNQLGGPNKATPKGLMKAMEIPGLTLYHLKSHLQKYRL 64
                79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.9E-27864IPR009057Homeodomain-like
SuperFamilySSF466895.02E-15964IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-211065IPR006447Myb domain, plants
PfamPF002495.2E-61263IPR001005SANT/Myb domain
PfamPF143791.3E-22111158IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MSLVLSTDAK PRLKWTCELH HIFIEAVNQL GGPNKATPKG LMKAMEIPGL TLYHLKSHLQ  60
KYRLGKSLKF DDNNLEVSSA SETQEAESKN DSTDFRGSVN VENNNPANEG VQITEALQLQ  120
MEVQKKLHEQ IEVQRHLQVK IEAQGKYLQS VLLKAQQTLA GYTSSTLGMD FARTELSRLA  180
SMVNQSSSFS EVTQVEEYEE AEDVEDGFLW CKKPENRVIT QPRRSVESSL TSLDSLETKL  240
VNNNNERVSV ELPLMEIKSE VPKNKKRNLN DIVFLECQPS NKRNFGADDD DDEQHLRLSL  300
NSYKKDMGTW PNIELGLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J7e-20966158Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462269.10.0PREDICTED: myb family transcription factor PHL8-like isoform X4
SwissprotF4I2741e-160PHL8_ARATH; Myb family transcription factor PHL8
TrEMBLA0A0D3CZB20.0A0A0D3CZB2_BRAOL; Uncharacterized protein
STRINGBo6g109120.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38782759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69580.11e-155G2-like family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]