PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC22257_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 86aa MW: 9165.91 Da PI: 9.4253

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC22257_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67.4	3.3e-21	32	80	1	49
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal 49 +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll+ + RrC22257_p1 32 PCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVFGASNIIKLLQVA 80 7********************************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.322	31	86	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.3E-20	32	79	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 86 aa Download sequence Send to blast
MLDMESKGDA SAAIIYASPA SSPPPPRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK 60 FSIAHRVFGA SNIIKLLQVA NSLLLV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	31	78	10	57	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	31	78	10	57	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013603026.1	3e-50	PREDICTED: LOB domain-containing protein 1-like
Swissprot	Q9LQR0	9e-32	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A078GDJ4	5e-49	A0A078GDJ4_BRANA; BnaC08g43470D protein
TrEMBL	A0A0D3DYI0	8e-49	A0A0D3DYI0_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6FMJ1	8e-49	A0A3P6FMJ1_BRAOL; Uncharacterized protein
STRING	Bo8g112780.1	1e-49	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM20654	4	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	4e-32	LOB domain-containing protein 1