PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC222_p7

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

G2-like

Protein Properties

Length: 160aa MW: 17934.8 Da PI: 9.8638

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC222_p7	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	63.1	5.4e-20	29	65	1	37
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk 37 kprl+Wtp+LHerF+eav+qLGG++kAtPkti+++ + RrC222_p7 29 KPRLKWTPDLHERFIEAVNQLGGADKATPKTIMKVSH 65 79*******************************9865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-15	27	63	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.51E-7	28	63	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-13	29	64	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MHLASERHPF LRGGNSPGDS GLILSTDAKP RLKWTPDLHE RFIEAVNQLG GADKATPKTI 60 MKVSHQHLIH TYICLVHLFF FGFTRVVNFM KFGYQKYRLS KNLNGQANSG LNKIGMMTMM 120 EEKSPSDADE IQSESLSIGP QPNKYAILNV LSYIASKLLV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	ATAC011698	1e-59	AC011698.6 Arabidopsis thaliana chromosome III BAC T11I18 genomic sequence, complete sequence.
GenBank	CP002686	1e-59	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018432891.1	7e-72	PREDICTED: myb-related protein 2 isoform X2
Swissprot	Q9SQQ9	3e-63	PHL9_ARATH; Myb-related protein 2
TrEMBL	A0A078ILQ8	1e-67	A0A078ILQ8_BRANA; BnaA05g37380D protein
TrEMBL	A0A397ZFW9	2e-67	A0A397ZFW9_BRACM; Uncharacterized protein
TrEMBL	M4ET22	2e-67	M4ET22_BRARP; Uncharacterized protein
STRING	Bra031952.1-P	3e-68	(Brassica rapa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	1e-65	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]