PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC22450_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

BBR-BPC

Protein Properties

Length: 118aa MW: 13131.7 Da PI: 8.9765

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC22450_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	67.7	5.1e-21	31	109	15	95
GAGA_bind 15 epaaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvenslasal 95 e++++l +++++ms++aerda+++ern+a+s++ +ava+rd a++qrdkalaer+kal+erdn+l+al+++ensl++al RrC22450_p2 31 EQHNALV--MNKKIMSILAERDAAVHERNQAVSARLEAVAARDQALQQRDKALAERDKALIERDNALAALQHHENSLNFAL 109 2556666..99****************************************************************998665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	0.0018	1	118	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	3.6E-11	15	102	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 118 aa Download sequence Send to blast
MENGGQYANG SDYLKGANSM WNMLPHHQIK EQHNALVMNK KIMSILAERD AAVHERNQAV 60 SARLEAVAAR DQALQQRDKA LAERDKALIE RDNALAALQH HENSLNFALT GGKRYQGG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013633652.1	2e-75	PREDICTED: protein BASIC PENTACYSTEINE4-like isoform X1
Refseq	XP_013716916.1	2e-75	protein BASIC PENTACYSTEINE4
Refseq	XP_013716917.1	2e-75	protein BASIC PENTACYSTEINE4
Swissprot	Q8S8C6	4e-66	BPC4_ARATH; Protein BASIC PENTACYSTEINE4
TrEMBL	A0A078JRW0	3e-74	A0A078JRW0_BRANA; BnaCnng67580D protein
STRING	Bo4g145820.1	7e-75	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G21240.2	2e-68	basic pentacysteine 4