PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2269_p4
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 397aa    MW: 43990.3 Da    PI: 7.3943
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2269_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.51.7e-114268127
                --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                +++++C+++ rtG C++G++C+F+H+p
  RrC2269_p4 42 PGEPNCSYYIRTGLCRFGSTCRFNHPP 68
                5789*********************97 PP
2zf-CCCH37.63.7e-1289113327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 +++C ++++tGtCk+G +CkF+H++
  RrC2269_p4  89 QPECEYYLKTGTCKFGVTCKFHHPR 113
                 799********************96 PP
3zf-CCCH37.93.1e-12135159327
                 S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                 ++ C +f+rtG+Ck+G++CkF+H++
  RrC2269_p4 135 EVDCAYFLRTGHCKFGATCKFNHPQ 159
                 578********************97 PP
4zf-CCCH37.15.2e-12280306127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +++++C+f+++tG Ck+G  CkF+H++
  RrC2269_p4 280 PGQPECQFYMKTGDCKFGTVCKFHHPR 306
                 5789*********************96 PP
5zf-CCCH38.42.1e-12326352127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ++++lC f++r+G+Ck+G++CkF+H++
  RrC2269_p4 326 PGEPLCVFYSRYGICKFGPSCKFHHPM 352
                 589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.544169IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-44168IPR000571Zinc finger, CCCH-type
PfamPF006424.5E-84368IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-54669IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-44767IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.10886114IPR000571Zinc finger, CCCH-type
SMARTSM003562.6E-586113IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-989113IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-690115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-492113IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.99132160IPR000571Zinc finger, CCCH-type
SMARTSM003565.7E-6132159IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-10135159IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6135161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4138158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.22279307IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5279306IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-8281306IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-6283308IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.1E-4285307IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507325353IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-7325352IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-9327352IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.19E-6328353IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4330351IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MDFNAGVPMS SLSPLMINQE AMWQMNLSPD ETMETGSYPE RPGEPNCSYY IRTGLCRFGS  60
TCRFNHPPDR EMVIATARMR GEYPERIGQP ECEYYLKTGT CKFGVTCKFH HPRNKAGIAG  120
RVSLNMLGYP LRSNEVDCAY FLRTGHCKFG ATCKFNHPQP QPTTNLMVPT SGQQQSYPWS  180
RASFIPSPRW QDPSGYTSLI MPQGVVPVQG WNPYSGQLGA VSPSGTGNEH NNYRNLQQSE  240
IKESGGSQTQ GSFSGLNTGS SVPVGGFYAL PSENVFPERP GQPECQFYMK TGDCKFGTVC  300
KFHHPRDRQA PPPDCLLSPI GLPLRPGEPL CVFYSRYGIC KFGPSCKFHH PMEVFAYDNT  360
ASETDEVVET SSGHSRRVSV SETRQATTTT SAEDTTN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0259660.0BT025966.1 Arabidopsis thaliana At3g02830 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018493196.10.0PREDICTED: zinc finger CCCH domain-containing protein 33
SwissprotQ8GXX70.0C3H33_ARATH; Zinc finger CCCH domain-containing protein 33
TrEMBLA0A078INM20.0A0A078INM2_BRANA; BnaA05g33310D protein
STRINGBra040604.1-P0.0(Brassica rapa)
STRINGBo5g151450.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM33892864
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]