PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC226_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MIKC_MADS
Protein Properties Length: 222aa    MW: 25682 Da    PI: 6.7258
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC226_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF29.59.5e-1019432751
               HHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF 27 LSvLCdaevaviifsstgklyeyss 51
               L +LCdaev +iifsstgkly+++s
  RrC226_p3 19 LAILCDAEVGLIIFSSTGKLYDFAS 43
               89*********************86 PP
2K-box721.8e-24661521399
      K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                 +++ ++e+a L++e++ Lq+++R+++Ge+L+ Ls+ eL++Le+qLe sl+ +R kK+++l+++i+el +k + +++en +L++k++
  RrC226_p3  66 PESEVKREAAVLRQELHALQENHRQIMGEQLNGLSVDELNNLENQLEISLRGVRMKKEHMLTREIQELSQKRNLIHQENVELSRKVQ 152
                356789*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006613.876145IPR002100Transcription factor, MADS-box
SMARTSM004328.5E-15144IPR002100Transcription factor, MADS-box
SuperFamilySSF554559.68E-17267IPR002100Transcription factor, MADS-box
PfamPF003198.0E-81741IPR002100Transcription factor, MADS-box
PfamPF014866.4E-2367151IPR002487Transcription factor, K-box
PROSITE profilePS5129714.22367157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008134Molecular Functiontranscription factor binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MGRGKIVIQR IDDSTSRQLA ILCDAEVGLI IFSSTGKLYD FASSSMKSVI DRYNKSKMEQ  60
QQLLNPESEV KREAAVLRQE LHALQENHRQ IMGEQLNGLS VDELNNLENQ LEISLRGVRM  120
KKEHMLTREI QELSQKRNLI HQENVELSRK VQRIHQENVE LYKKLQSDGF NIQCVFQAYT  180
ANTNGFIHRE LIVAHDESRT QIRLQLSQPD HSDYETPPRG SD
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3369791e-123AF336979.1 Arabidopsis thaliana MADS-box protein AGL21 mRNA, complete cds.
GenBankBT0248461e-123BT024846.1 Arabidopsis thaliana At4g37940 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469683.11e-138PREDICTED: agamous-like MADS-box protein AGL21
SwissprotQ9SZJ61e-126AGL21_ARATH; Agamous-like MADS-box protein AGL21
TrEMBLA0A398AHD71e-127A0A398AHD7_BRACM; Uncharacterized protein
TrEMBLM4D5P01e-127M4D5P0_BRARP; Uncharacterized protein
STRINGBra011797.1-P1e-128(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53024105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.11e-128AGAMOUS-like 21
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Yu LH, et al.
    Arabidopsis MADS-Box Transcription Factor AGL21 Acts as Environmental Surveillance of Seed Germination by Regulating ABI5 Expression.
    Mol Plant, 2017. 10(6): p. 834-845
    [PMID:28438576]
  3. Qu Y, et al.
    Peroxisomal CuAOζ and its product H2O2 regulate the distribution of auxin and IBA-dependent lateral root development in Arabidopsis.
    J. Exp. Bot., 2017. 68(17): p. 4851-4867
    [PMID:28992128]
  4. Sun CH, et al.
    Chrysanthemum MADS-box transcription factor CmANR1 modulates lateral root development via homo-/heterodimerization to influence auxin accumulation in Arabidopsis.
    Plant Sci., 2018. 266: p. 27-36
    [PMID:29241564]