PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC22795_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB
Protein Properties Length: 135aa    MW: 15268.9 Da    PI: 8.9144
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC22795_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.29.1e-191358147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g+W++eEdell  +v+++G+++W++I++ +  gR++k+c++rw + 
      RrC22795_p1 13 KGPWSPEEDELLQTLVQKHGPRNWSLISKPIS-GRSGKSCRLRWCNQ 58
                     79******************************.***********985 PP
2Myb_DNA-binding574.5e-1867109347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++++eEde +++a++++G++ W+tIar ++ gRt++ +k++w++ 
      RrC22795_p1  67 SFSPEEDETILHAHARFGNK-WATIARLLN-GRTDNAIKNHWNST 109
                      69******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129424.31863IPR017930Myb domain
SuperFamilySSF466891.94E-3210106IPR009057Homeodomain-like
SMARTSM007172.9E-151261IPR001005SANT/Myb domain
PfamPF002493.2E-181358IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.6E-261466IPR009057Homeodomain-like
CDDcd001671.06E-131557No hitNo description
SMARTSM007171.8E-1464112IPR001005SANT/Myb domain
PROSITE profilePS5129420.77765114IPR017930Myb domain
PfamPF002491.2E-1567109IPR001005SANT/Myb domain
CDDcd001678.08E-1167110No hitNo description
Gene3DG3DSA:1.10.10.601.7E-2367113IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
MAGSTRKETD RIKGPWSPEE DELLQTLVQK HGPRNWSLIS KPISGRSGKS CRLRWCNQLS  60
PEVEHRSFSP EEDETILHAH ARFGNKWATI ARLLNGRTDN AIKNHWNSTL KRKCRGGWTS  120
DEGGNGGYDG NLTDE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C9e-42121143105C-Myb DNA-Binding Domain
1msf_C9e-42121143105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that functions in salt stress response. Acts as negative regulator of NHX7/SOS1 and CBL4/SOS3 induction in response to salt stress (PubMed:23809151). In response to auxin, activates the transcription of the auxin-responsive gene IAA19. The IAA19 transcription activation by MYB73 is enhanced by direct interaction between MYB73 and PYL8 (PubMed:24894996). {ECO:0000269|PubMed:23809151, ECO:0000269|PubMed:24894996}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress. {ECO:0000269|PubMed:23809151}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018478363.12e-96PREDICTED: transcription factor MYB44
SwissprotO231602e-76MYB73_ARATH; Transcription factor MYB73
TrEMBLV4LUU22e-85V4LUU2_EUTSA; Uncharacterized protein
STRINGXP_006404809.13e-86(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67728135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-81myb domain protein 70
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]