PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC22854_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 237aa    MW: 26586.4 Da    PI: 6.6063
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC22854_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.000267294123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C+ C+k+F ++  L  H  +H
  RrC22854_p1 72 FQCKGCKKVFASHQALGGHRASH 94
                 89**************9999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.48E-67194No hitNo description
PfamPF139125.3E-97196IPR007087Zinc finger, C2H2
SMARTSM003550.277294IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.8477299IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SuperFamilySSF576678.48E-6138165No hitNo description
PfamPF139128.3E-13142166IPR007087Zinc finger, C2H2
SMARTSM003550.51143165IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.307143165IPR007087Zinc finger, C2H2
PROSITE patternPS000280145165IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MKSSCIDSFM FNSQGQHDEE NMSRLPWKRV KDEDEELANC LVLLSNSGSA YNKEHGHIKD  60
KTVKKQKTAH VFQCKGCKKV FASHQALGGH RASHKKVKGC FASQDKKAEE EEEEEYKVED  120
DDEEEEEEED KPHIIARKKT NAHECTICHR VFSSGQALGG HKRCHWLTPS TNYLRMTPLS  180
DSSTHHHHSQ PLDQPSLDLN LACVDPTAMS VGRDGGGNNL NATSSNSWLK LASGDWS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1895100.0AC189510.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB089D07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018514020.11e-125PREDICTED: zinc finger protein ZAT2-like
TrEMBLA0A3P6CRU31e-126A0A3P6CRU3_BRAOL; Uncharacterized protein
STRINGBo4g187280.11e-126(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM138951318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.15e-26C2H2-like zinc finger protein