PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC22928_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

Dof

Protein Properties

Length: 302aa MW: 33422.1 Da PI: 9.7885

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC22928_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.6	1.3e-38	60	118	4	62
zf-Dof 4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++++cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGg++rknk+ss RrC22928_p1 60 EKVNCPRCNSTNTKFCYYNNYSLTQPRYFCKGCRRYWTEGGSLRNVPVGGSSRKNKRSS 118 789*****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-29	57	116	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.8E-33	61	116	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	62	116	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	64	100	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MINVKPIEQI ISNNTSQQQL QTFIATTERP NHTASKSGSG AGNDNNTATT MESRKARPLE 60 KVNCPRCNST NTKFCYYNNY SLTQPRYFCK GCRRYWTEGG SLRNVPVGGS SRKNKRSSTP 120 LASRSNPKLP DLNPPFLFAS QIPNKSSKDL NLLSFPVMQD HHHGMSQLLH MPKIENNNTS 180 SSIYASSSPG ASSRGMNMFL PGQMMDSNSV LYSSLGLPTL MADYKMSNNN LSFSTDHHQG 240 IGHNTINNNQ RAEDNNHAGD MNGASRVLFP FSDTKELSST NQEKSHNTYW SGMFSNTGGS 300 SW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JN979481	0.0	JN979481.1 Brassica rapa subsp. pekinensis auxin response factor 18-1 (ARF18-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018484385.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X1
Refseq	XP_018484386.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X1
Refseq	XP_018484387.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X2
Refseq	XP_018484388.1	0.0	PREDICTED: dof zinc finger protein DOF3.7-like isoform X2
Swissprot	Q43385	1e-158	DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBL	A0A3P6CH46	0.0	A0A3P6CH46_BRAOL; Uncharacterized protein
STRING	Bra014418.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2528	26	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	1e-164	Dof family protein