PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC229_p11
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 185aa    MW: 19116.3 Da    PI: 9.7199
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC229_p11genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.22e-11154179127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 ykt+ C +f++ G C +GdrC+FaHg+
  RrC229_p11 154 YKTKMCERFSK-GNCTFGDRCHFAHGE 179
                 9**********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF547911.2E-1542124IPR004088K Homology domain, type 1
SMARTSM003221.8E-1152122IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.102.3E-1652121IPR004088K Homology domain, type 1
PROSITE profilePS5008414.5553117IPR004088K Homology domain, type 1
PfamPF000132.7E-1255119IPR004088K Homology domain, type 1
CDDcd001052.32E-1355117No hitNo description
Gene3DG3DSA:4.10.1000.108.1E-17148183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.037153180IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.84E-9153183IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6153179IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-8154179IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MESGYNPVSQ MTNMGSPMSQ VSRNMQGSGG GGGGRFTGRG ESGPGHVSSF GASATAKISV  60
DASLAGAIIG KGGVSSKQIC RQTGAKLSIQ DHERDPNLKN IELEGTFEQI NEASAMVREL  120
IGRLNSASRR PPGVGGGGGG GLGSEGKPHP GSNYKTKMCE RFSKGNCTFG DRCHFAHGEA  180
ELRRS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002884884.11e-105zinc finger CCCH domain-containing protein 36 isoform X1
SwissprotQ9C7C31e-100C3H36_ARATH; Zinc finger CCCH domain-containing protein 36
TrEMBLD7KZP61e-103D7KZP6_ARALL; KH domain-containing protein
STRINGfgenesh1_pm.C_scaffold_30010101e-104(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23362875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.18e-82C3H family protein
Publications ? help Back to Top
  1. Yan Z,Jia J,Yan X,Shi H,Han Y
    Arabidopsis KHZ1 and KHZ2, two novel non-tandem CCCH zinc-finger and K-homolog domain proteins, have redundant roles in the regulation of flowering and senescence.
    Plant Mol. Biol., 2017. 95(6): p. 549-565
    [PMID:29076025]