PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23189_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 216aa    MW: 24224.3 Da    PI: 8.946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23189_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-054264123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 y+C+ Cg+ F++   L  H+++H
  RrC23189_p1 42 YTCSFCGRDFKSAQALGGHMNVH 64
                 9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.1E-73968No hitNo description
Gene3DG3DSA:3.30.160.602.0E-44066IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.0714269IPR007087Zinc finger, C2H2
PfamPF139127.5E-64265IPR007087Zinc finger, C2H2
SMARTSM003550.00294264IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804464IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MSMKLRPVAA RQSLWPFGRD RAFAEIEEYG GGGGCMWPPR SYTCSFCGRD FKSAQALGGH  60
MNVHRRDRAR LKQQSLSSSS TEQATPLDCD HQQQVQKQHE VLDVGPKFPF QGDSRKPSGT  120
KREISDFGNS NVLESSMKRF EHYNDDVQTD LSIGLLSSEF DPRQKQLING FSKKAKTDVT  180
RLPVMLGLVI GVSKINGHHE ELDLELRLGA HPPKIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-123764229superman protein
2l1o_A2e-123764229Transcriptional regulator SUPERMAN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator essential for petal development. Required for the early development of the organ primordia of the second whorl. Acts downstream of AP1 and PTL. {ECO:0000269|PubMed:14681191}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475593.11e-160PREDICTED: probable transcriptional regulator RABBIT EARS
SwissprotQ9LHS91e-116RBE_ARATH; Probable transcriptional regulator RABBIT EARS
TrEMBLA0A397XP141e-116A0A397XP14_BRACM; Uncharacterized protein
STRINGBra009160.1-P1e-116(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51282544
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06070.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Li J, et al.
    RABBIT EARS regulates the transcription of TCP4 during petal development in Arabidopsis.
    J. Exp. Bot., 2016. 67(22): p. 6473-6480
    [PMID:27838638]