PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23258_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 149aa    MW: 15529.5 Da    PI: 9.6899
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23258_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.89.7e-165791135
         GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                 C+ Cgt kTplW  gp g+k+LCnaCG++ rkk++
  RrC23258_p1 57 CVDCGTFKTPLWCGGPAGPKSLCNACGIKSRKKRQ 91
                 *********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.30851105IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.33E-1151104No hitNo description
Gene3DG3DSA:3.30.50.107.4E-1451106IPR013088Zinc finger, NHR/GATA-type
SMARTSM004011.8E-1051102IPR000679Zinc finger, GATA-type
CDDcd002026.92E-1056104No hitNo description
PfamPF003209.4E-145791IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MSEGSEETKM KIDSTGELHG CTGPHSIGPG FAPGSSSGSG SGGGGSGGSS SETKRTCVDC  60
GTFKTPLWCG GPAGPKSLCN ACGIKSRKKR QAAPGIKPEK KIRKSNSSDS DLSLDHHRNN  120
YKNKIRKMMI TELEVAAVAA AKESVNFWI
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013639228.11e-43PREDICTED: GATA transcription factor 17-like
SwissprotQ9LIB52e-32GAT17_ARATH; GATA transcription factor 17
TrEMBLA0A0D3ACZ93e-42A0A0D3ACZ9_BRAOL; Uncharacterized protein
STRINGBo1g122970.15e-43(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16870.13e-31GATA transcription factor 17
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]