PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC232_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 619aa    MW: 71253.4 Da    PI: 4.7528
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC232_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012590609221
                EETTTTEEESSHHHHHHHHH CS
    zf-C2H2   2 kCpdCgksFsrksnLkrHir 21 
                +C  Cg+ F ++  L +Hi 
  RrC232_p2 590 ECDRCGEEFESRTKLFKHIA 609
                5*****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.287.1102.0E-22589IPR001623DnaJ domain
SuperFamilySSF465653.27E-226113IPR001623DnaJ domain
SMARTSM002716.8E-191073IPR001623DnaJ domain
PROSITE profilePS5007618.5771181IPR001623DnaJ domain
CDDcd062571.02E-141170IPR001623DnaJ domain
PfamPF002263.2E-191278IPR001623DnaJ domain
PRINTSPR006253.0E-131331IPR001623DnaJ domain
PRINTSPR006253.0E-133146IPR001623DnaJ domain
PRINTSPR006253.0E-135373IPR001623DnaJ domain
PROSITE patternPS0063605877IPR018253DnaJ domain, conserved site
SuperFamilySSF576671.09E-14299351No hitNo description
SMARTSM004515.9E-8306340IPR003604Zinc finger, U1-type
PfamPF121713.4E-10308334IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.82309333IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280311333IPR007087Zinc finger, C2H2
SMARTSM003554.3589613IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.515589618IPR007087Zinc finger, C2H2
PROSITE patternPS000280591613IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MASSSRSEKR CLYEILDVSK ESSPEEIRSS YRRLALQRHP DKLIKAGGIS EADATAQFQE  60
LVHAYEVLSD PKERAWYDSH RSQILFADQG SAGGSKSGGM PGGSVPDLFA FFSTTVYSGY  120
SDAGKGFYKV YFDVFNSVYL NEIKFARTLG LSIDSVREAP IMGNLESPYS QVTAFYNYWL  180
GFSTVMDFCW VDEYDVMAGP NRRMRRKMEE ENKKVRKKAK REYNETVRGL AAFVKKRDKR  240
VVDMMVKKSA EMELKKAEER ERKKKMEKER LERAMKYEEP DWAKAQDEEE EEVEEDGGAD  300
DGKKKSEQLY CIVCSKKFKS EKQWKNHEQS KKHKEKVAEL RETFSDVEEE EEEEIDEIPE  360
TVEELEGLNM EDEEEEEVVG EADETDDEYY MAEEDVKESS EDEDENEDGD DEMSLLKKMV  420
QKNKRKNVVS REEDEVQVEI ESDSEFDNQK STTSRNRKGK KERNKRNAGQ DRTMDDANKT  480
QIAMDDGNNT DDNVNATDSA SGAVEESQKE EADPMEYDNR KSTGRRRRSK KGKDKSSEAD  540
DTTQKATEET RSETFENQSE YIEHKKAPRS KKSTRGMKSK GTSKKASNNE CDRCGEEFES  600
RTKLFKHIAD TGHATVKSR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212220KKVRKKAKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018470874.10.0PREDICTED: DNAJ protein JJJ1 homolog
SwissprotQ9C9110.0JJJ1_ARATH; DNAJ protein JJJ1 homolog
TrEMBLA0A0D3AQH00.0A0A0D3AQH0_BRAOL; Uncharacterized protein
STRINGBo2g081060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM88692230
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74250.11e-162DNAJ heat shock N-terminal domain-containing protein