PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23437_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 271aa    MW: 30966.2 Da    PI: 6.9032
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23437_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF369.1e-121454848
                 HHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS
       SRF-TF  8 nrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48
                 ++   f  R +++lKKA+ELS LC+++ +vi +  +g+l +
  RrC23437_p2 14 RKDAFFKARAKTVLKKAFELSELCGVNLCVICYDREGNLVT 54
                 55666788***************************999854 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004320.0073158IPR002100Transcription factor, MADS-box
PROSITE profilePS500668.551252IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-121395IPR002100Transcription factor, MADS-box
CDDcd002661.82E-151485No hitNo description
PfamPF003197.9E-91454IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MTTRKTCRSK LSVRKDAFFK ARAKTVLKKA FELSELCGVN LCVICYDREG NLVTTWPEND  60
EAQVKATAER FSRLSEQERN KKSTNLSRFL NKKMMDEKKA SLKANDNKFS KKVFVFEDSL  120
QTRLRLFQEK ITELVDDLGS DDPSLINVDQ CQPILMNHLS TTKSPTDLPT TSLDHPSNFS  180
ILLYNHDNGT FTQLANSSAL PPSFEQPMIP FNEDYGTNYL DLLLGEQDMR SCYNFDLPIP  240
PPMMHTQTSM FQGIPYNQMQ SSSGYPTMMF S
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018443452.10.0PREDICTED: agamous-like MADS-box protein AGL53
RefseqXP_018443454.10.0PREDICTED: agamous-like MADS-box protein AGL53
TrEMBLA0A397YPC53e-76A0A397YPC5_BRACM; Uncharacterized protein
STRINGBra004071.1-P2e-75(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15639717
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G27070.16e-45AGAMOUS-like 53