PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2344_p2
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 251aa    MW: 28301.4 Da    PI: 8.5829
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2344_p2genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.42e-192272155
         AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                +++ GVr+++ +g+WvAeI+d +   ++ r +lg+fgtaeeAa+a+++a+  l+g
  RrC2344_p2 22 TKFVGVRQRP-SGKWVAEIKDTT---QKIRMWLGTFGTAEEAARAYDEAACLLRG 72
                699*******.7*********32...35**********************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.4E-142272IPR001471AP2/ERF domain
CDDcd000182.50E-332282No hitNo description
Gene3DG3DSA:3.30.730.109.8E-282381IPR001471AP2/ERF domain
SuperFamilySSF541713.27E-192380IPR016177DNA-binding domain
PROSITE profilePS5103219.4542380IPR001471AP2/ERF domain
SMARTSM003802.1E-382386IPR001471AP2/ERF domain
PRINTSPR003671.1E-72435IPR001471AP2/ERF domain
PRINTSPR003671.1E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MEQKTTQKQK TKEKSKGNNK KTKFVGVRQR PSGKWVAEIK DTTQKIRMWL GTFGTAEEAA  60
RAYDEAACLL RGSNTRTNFA NHFPNNSQLS LKIRNLLHQK QSMKQQQKQQ NKPVSSFSEC  120
NINYTSTATS PTASNTTTVM QPNDVYRPDS SAMLQQETES VHFPYYCPFD SGFNHQVPST  180
QGGEETHGNF NSSNSTDQHL GLADLQREIS SSLYAMNGAT YYNNMNAEYA IFDPTDPIWD  240
LPSLSQLFCP I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1423891481Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469641.11e-166PREDICTED: ethylene-responsive transcription factor RAP2-11-like
SwissprotQ6J9S11e-127RA211_ARATH; Ethylene-responsive transcription factor RAP2-11
TrEMBLA0A078HBS01e-128A0A078HBS0_BRANA; BnaC09g37870D protein
TrEMBLA0A0D3EDY71e-128A0A0D3EDY7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6A9121e-128A0A3P6A912_BRACM; Uncharacterized protein
TrEMBLA0A3P6EQ651e-128A0A3P6EQ65_BRAOL; Uncharacterized protein
STRINGBostr.26527s0221.1.p1e-133(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM75262641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-103related to AP2 11
Publications ? help Back to Top
  1. Meng S, et al.
    Arabidopsis NRT1.5 Mediates the Suppression of Nitrate Starvation-Induced Leaf Senescence by Modulating Foliar Potassium Level.
    Mol Plant, 2016. 9(3): p. 461-470
    [PMID:26732494]