PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2346_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WRKY
Protein Properties Length: 528aa    MW: 57594.1 Da    PI: 6.6353
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2346_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.3e-30170226259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 dDgynWrKYGqK vkgse+prsYY+Ct+++C+vkkk+ers+ +++++ei+Y   Hnh+
  RrC2346_p1 170 DDGYNWRKYGQKLVKGSEYPRSYYKCTHPNCEVKKKIERSR-EGHITEIIYVKAHNHT 226
                 8****************************************.***************8 PP
2WRKY100.21.2e-31337394259
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                 +Dgy+WrKYGqK+vkg+++prsY++Cts+gC+v+k+ver+++d + v +tY g+Hnhe
  RrC2346_p1 337 EDGYRWRKYGQKVVKGNPNPRSYFKCTSNGCTVTKHVERASNDLTSVLTTYIGKHNHE 394
                 8********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.6E-27163228IPR003657WRKY domain
PROSITE profilePS5081122.768164228IPR003657WRKY domain
SuperFamilySSF1182902.75E-24167228IPR003657WRKY domain
SMARTSM007742.9E-31169227IPR003657WRKY domain
PfamPF031066.5E-23170225IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.7E-34321396IPR003657WRKY domain
SuperFamilySSF1182902.22E-27328396IPR003657WRKY domain
PROSITE profilePS5081134.716331396IPR003657WRKY domain
SMARTSM007746.5E-36336395IPR003657WRKY domain
PfamPF031065.1E-24337394IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009409Biological Processresponse to cold
GO:0009555Biological Processpollen development
GO:0009846Biological Processpollen germination
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MPGFDVNFAV MGEWLDPSPN HKKRSKAALD REVSLEDMKN FMQTSTQEKP WYSRNGLSER  60
IAARTGFKVP SLKTQSIFTP TLLAISSPGV RPATLLESPV FLSNPLISPT TGKLSSLTLD  120
EAKDEFTDDI ATSLVLSLDP TKIGSEPDDS QAHESGLGNS MMRSSGAAED DGYNWRKYGQ  180
KLVKGSEYPR SYYKCTHPNC EVKKKIERSR EGHITEIIYV KAHNHTKPPP TNRRSGTGPS  240
GAGDDDMQID GTEQEGFAGS MQVQSGAQFG GYGGVATDAF SKYEEDSKSH MSVSMGYDGQ  300
VDESERKRRK LEASGSTRGT RQPKVVVKTT SDIDILEDGY RWRKYGQKVV KGNPNPRSYF  360
KCTSNGCTVT KHVERASNDL TSVLTTYIGK HNHEVPAARN SSQVSRGSSG TLQGGLATQA  420
GNEHEHYPMP HSSSEALVTD NSSLLDFHPQ LRPPSGFSVY YADQAELSDI SVSGLAIGLP  480
SLVDPGIGDP TGLMLQLAAE PKVEPVSQQE LGYSRSSLID IMSRLQQI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-31170397878Probable WRKY transcription factor 4
2lex_A3e-31170397878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF4300510.0KF430051.1 Brassica rapa WRKY transcription factor 34 (WRKY34) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018483453.10.0PREDICTED: probable WRKY transcription factor 34
SwissprotO655900.0WRK34_ARATH; Probable WRKY transcription factor 34
TrEMBLA0A3P5ZTG80.0A0A3P5ZTG8_BRACM; Uncharacterized protein
STRINGBo7g110920.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141811524
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26440.10.0WRKY DNA-binding protein 34
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Hu X, et al.
    Proteasome-mediated degradation of FRIGIDA modulates flowering time in Arabidopsis during vernalization.
    Plant Cell, 2014. 26(12): p. 4763-81
    [PMID:25538183]
  3. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]