PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC235_p8

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NAC

Protein Properties

Length: 300aa MW: 33308.1 Da PI: 8.2015

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC235_p8	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.7	1.9e-52	14	139	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelv 100 lppGfrF Ptdeel+v+yL++kv+g +++l +vi ++d+yk++PwdLp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk ++s +g+ v RrC235_p8 14 LPPGFRFYPTDEELLVQYLCRKVAGYHFSL-QVIGDIDLYKFDPWDLPSKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIITS-DGHRV 111 79*************************9.99***********8777899*******************************9999.999 PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfy g+apkg+kt+W+mheyrl RrC235_p8 112 GIKKALVFYAGKAPKGTKTNWIMHEYRL 139 **************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-67	8	162	IPR003441	NAC domain
PROSITE profile	PS51005	60.773	14	162	IPR003441	NAC domain
Pfam	PF02365	6.2E-26	15	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MGVREMDPLA QLSLPPGFRF YPTDEELLVQ YLCRKVAGYH FSLQVIGDID LYKFDPWDLP 60 SKALFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITSDGHR VGIKKALVFY 120 AGKAPKGTKT NWIMHEYRLF EHSRSHGSSK LDDWVLCRIY KKTSGSQRQQ AVAPVQPEHS 180 TNGSSSSSSS HHEDVLDSFP EMKDRSFDLP RVNSLRTLLN GNFDWASLAG LNPIPELAPA 240 SSGYGGGGYD AFRAAEGEAE SGLRNTQMNS SELTQSFGYS SSGLSSGGFG PSGQTFEFRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-107	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-107	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-107	1	168	4	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-107	1	168	4	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-107	1	168	7	174	NAC domain-containing protein 19
3swm_B	1e-107	1	168	7	174	NAC domain-containing protein 19
3swm_C	1e-107	1	168	7	174	NAC domain-containing protein 19
3swm_D	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_A	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_B	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_C	1e-107	1	168	7	174	NAC domain-containing protein 19
3swp_D	1e-107	1	168	7	174	NAC domain-containing protein 19
4dul_A	1e-107	1	168	4	171	NAC domain-containing protein 19
4dul_B	1e-107	1	168	4	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269\|PubMed:15319476}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269\|PubMed:15319476, ECO:0000269\|Ref.7}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF715853	0.0	KF715853.1 Brassica oleracea var. italica NAC-domain protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478479.1	0.0	PREDICTED: NAC domain-containing protein 72
Swissprot	Q93VY3	0.0	NAC72_ARATH; NAC domain-containing protein 72
TrEMBL	A0A078GWD9	0.0	A0A078GWD9_BRANA; BnaA03g48570D protein
STRING	Bra019052.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1435	27	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G27410.2	1e-176	NAC family protein

Publications ? help Back to Top
Zhu X, et al. Jasmonic acid promotes degreening via MYC2/3/4- and ANAC019/055/072-mediated regulation of major chlorophyll catabolic genes. Plant J., 2015. 84(3): p. 597-610 [PMID:26407000] Li S, et al. The role of ANAC072 in the regulation of chlorophyll degradation during age- and dark-induced leaf senescence. Plant Cell Rep., 2016. 35(8): p. 1729-41 [PMID:27154758] Ye H, et al. RD26 mediates crosstalk between drought and brassinosteroid signalling pathways. Nat Commun, 2017. 8: p. 14573 [PMID:28233777]