PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23709_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 179aa    MW: 19804.8 Da    PI: 8.3177
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23709_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-105445494
                 EETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
           B3 54 kksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                 +++++  l+kGW++F+kangLk+g+ ++++l+++ ++ +++
  RrC23709_p1  5 RSGKALCLGKGWRKFAKANGLKTGEYFTLELVWK-NEIPML 44
                 5566699************************995.443555 PP
2B341.42.6e-13901761099
                  HHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
           B3  10 vlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                    k + l lp +f++++g+ k +   +tl  ++g +W  +l    ++g++ ++ GW++F++ang+k gD++ + ++++  ++ +v+k++ +
  RrC23709_p1  90 DVKACTLHLPTEFVATIGIHKLG--IITLLGKDGMKWWGYL--LSRDGTVAIGIGWRNFCEANGVKLGDSFSLVFINEeVDTGPVLKFCPN 176
                  456789***********988655..8***************..999999***********************9999777888899999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.334150IPR003340B3 DNA binding domain
PfamPF023624.5E-8544IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-9648IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-7644IPR015300DNA-binding pseudobarrel domain
CDDcd100172.19E-71246No hitNo description
Gene3DG3DSA:2.40.330.108.5E-1678176IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.8E-1779176IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.3E-1381177IPR003340B3 DNA binding domain
PROSITE profilePS5086311.13881176IPR003340B3 DNA binding domain
PfamPF023621.7E-1190176IPR003340B3 DNA binding domain
CDDcd100171.96E-1094174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MYEERSGKAL CLGKGWRKFA KANGLKTGEY FTLELVWKNE IPMLSLVNTE STSDIKQRGE  60
PSKAMEKERS TDTSSIVQNR VVTLALETKD VKACTLHLPT EFVATIGIHK LGIITLLGKD  120
GMKWWGYLLS RDGTVAIGIG WRNFCEANGV KLGDSFSLVF INEEVDTGPV LKFCPNSGN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479770.11e-116PREDICTED: B3 domain-containing protein REM12-like
SwissprotP0CAP45e-58REM12_ARATH; B3 domain-containing protein REM12
TrEMBLA0A078JGZ91e-114A0A078JGZ9_BRANA; BnaCnng48570D protein
TrEMBLA0A0D3C1U91e-114A0A0D3C1U9_BRAOL; Uncharacterized protein
STRINGBo4g154870.11e-115(Brassica oleracea)
STRINGBo4g154880.11e-113(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142671121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.12e-60B3 family protein