PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2374_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 252aa MW: 27318.7 Da PI: 7.9

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2374_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	101.4	8.6e-32	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C++C+vlr++C+++C+l+p++ +++q +++ +v+k+FG++ ++++++a+pe++r+++++sl+yeA+ r+ +Pv+Ga+g++++++++++q+++e+ RrC2374_p1 2 SCNGCRVLRKGCSENCILRPCIqwiesADAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLYEACGRTVNPVNGAIGMLWTGNWNVCQAAVET 100 6*******************9998666778**************************************************************999 PP DUF260 95 all 97 +l+ RrC2374_p1 101 VLR 103 876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	20.43	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.6E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 252 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCIQWIESAD AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLYE ACGRTVNPVN GAIGMLWTGN WNVCQAAVET VLRGGSLRPI PELLAHGGGG 120 FAGFPTATSE EASEICTEML SLQHNDGSSD DRNMYHHSRF SSSRSRSRQD SSPTKRKRVE 180 QQPSSELDLS LIPNFPVKTT PCSTRQRSRT PSMTSEESVT TTTTTTPTSF WDNTAAGGDL 240 CGNGSKLLNL FV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018433951.1	0.0	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9FN11	1e-129	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A291LR19	1e-146	A0A291LR19_BRARR; Transcription factor LBD37b
TrEMBL	A0A397YK28	1e-146	A0A397YK28_BRACM; Uncharacterized protein
TrEMBL	M4D6Q4	1e-146	M4D6Q4_BRARP; Uncharacterized protein
STRING	Bra012164.1-P	1e-147	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM821	28	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-113	LOB domain-containing protein 37

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]