PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23759_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 173aa    MW: 19710.3 Da    PI: 6.3618
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23759_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS164.96.8e-5111168220373
         GRAS 220 leserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWre 317
                   +   ++++ lv+s++P  vvv+eqea+hns ++  r++++l+yysa+fd +++ l+ +s  r+k+E++l+grei+n+vaceg++r+erh  +++Wr+
  RrC23759_p1  11 AA--VRDFVGLVRSTNPVAVVVAEQEAEHNSRQLEGRVFNSLKYYSAVFDVMHKRLGVDSLMRVKIEEVLFGREIRNIVACEGSHRQERHVGFGQWRR 106
                  33..369******************************************************************************************* PP

         GRAS 318 rleeaGFkpvplsekaakqaklllrkvk.sdg..yrve...eesgslvlgWkdrpLvsvSaW 373
                  +le+ GF+++ +se+++ q ++llr+++ +d+  ++ve   e+ g ++l W d+pL++vSaW
  RrC23759_p1 107 MLEQLGFRSLGVSEREVLQSRMLLRMYGdGDEefFNVErsdEDGGGVTLRWLDQPLYTVSAW 168
                  ****************************6555889**97766678888************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098521.2911143IPR005202Transcription factor GRAS
PfamPF035142.3E-4811168IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MHKTLYDGTG AAVRDFVGLV RSTNPVAVVV AEQEAEHNSR QLEGRVFNSL KYYSAVFDVM  60
HKRLGVDSLM RVKIEEVLFG REIRNIVACE GSHRQERHVG FGQWRRMLEQ LGFRSLGVSE  120
REVLQSRMLL RMYGDGDEEF FNVERSDEDG GGVTLRWLDQ PLYTVSAWSV GGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-181169220379Protein SCARECROW
5b3h_A2e-181169219378Protein SCARECROW
5b3h_D2e-181169219378Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018457562.11e-120PREDICTED: scarecrow-like protein 28
SwissprotQ9CAN31e-95SCL28_ARATH; Scarecrow-like protein 28
TrEMBLA0A078JRL11e-114A0A078JRL1_BRANA; BnaCnng67210D protein
STRINGBo00795s120.11e-112(Brassica oleracea)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G63100.17e-90GRAS family protein