PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23829_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 173aa    MW: 19183.8 Da    PI: 3.9354
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23829_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B362.28.6e-20890997
                 HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3  9 dvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 dvl +    +p +f e+ + +   ++t +l+ + g +W+v++  +k ++r+++t+GW++F+++++Lk+g+f++F +dg+++f   v+vf
  RrC23829_p1  8 DVLPRFSKAIPESFSEHLEDP--LPQTAKLQGTGGGVWTVTF--KKIRDRVYFTSGWSKFAEDHELKDGEFLTFVYDGSHTF--EVSVF 90
                 666677788*****9655655..889****************..********************************998888..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086314.156193IPR003340B3 DNA binding domain
CDDcd100178.38E-21690No hitNo description
PfamPF023622.3E-16889IPR003340B3 DNA binding domain
SMARTSM010191.8E-171393IPR003340B3 DNA binding domain
SuperFamilySSF1019369.02E-231395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-211595IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MSGSEEDDVL PRFSKAIPES FSEHLEDPLP QTAKLQGTGG GVWTVTFKKI RDRVYFTSGW  60
SKFAEDHELK DGEFLTFVYD GSHTFEVSVF GLSGCKEIRA AVETVNLSDV DSDKKEEEEG  120
DDDDPSFDAG EDDEVSQSVD TVSNAEVVEG FSNLEVESNP CFTTTLKSRI YEL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-16149523104At1g16640
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892221e-101AC189222.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB010M19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018475324.11e-103PREDICTED: B3 domain-containing protein REM20-like
SwissprotQ8LAV55e-44REM20_ARATH; B3 domain-containing protein REM20
TrEMBLA0A078H3B32e-89A0A078H3B3_BRANA; BnaC09g22010D protein
TrEMBLA0A0D3E7R92e-89A0A0D3E7R9_BRAOL; Uncharacterized protein
STRINGBo9g074330.14e-90(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM15612380
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53310.12e-41B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]