PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC23935_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 115aa    MW: 13322.8 Da    PI: 7.2952
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC23935_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_128.63.1e-0988114531
                  CHHHCHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeL 31 
                  +++rr+ +NRe+ArrsR RK+  ++eL
  RrC23935_p1  88 RKQRRMLSNRESARRSRMRKQRHLDEL 114
                  79*********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS502178.65786115IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.5E-688114No hitNo description
PfamPF001701.3E-688114IPR004827Basic-leucine zipper domain
SuperFamilySSF579597.99E-788114No hitNo description
CDDcd147023.18E-1289114No hitNo description
PROSITE patternPS00036091106IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MIPAGITAYC QYLSPENLAT LPAEFNMINM PSSPTSSSSL TYLNDLINNN FSSSSNGQDL  60
MMSNNSTSDE DHQHHHHHHQ SIIILDERKQ RRMLSNRESA RRSRMRKQRH LDELW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1100107RRSRMRKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4935452e-38AB493545.1 Arabidopsis thaliana At2g04038 gene for hypothetical protein, partial cds, clone: RAAt2g04038.
GenBankAC0071782e-38AC007178.6 Arabidopsis thaliana chromosome 2 clone F3L12 map mi320, complete sequence.
GenBankCP0026852e-38CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013613647.11e-65PREDICTED: basic leucine zipper 43
TrEMBLA0A0D3AVT93e-64A0A0D3AVT9_BRAOL; Uncharacterized protein
STRINGBo2g138370.15e-65(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28922469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04038.12e-31basic leucine-zipper 48