PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC240_p10

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

GRAS

Protein Properties

Length: 682aa MW: 77851.7 Da PI: 5.0787

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC240_p10	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	341.9	1.1e-104	303	679	2	373
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkfshltaN 99 ++lL+ cA+ +s gd+ + lL++++ ++sp gd+ qRla++f++AL+arl++s+ ++ ++ + ++++++ ++ l+++k+f +sP++++ ++ N RrC240_p10 303 RTLLILCAQSISIGDMITSHDLLKQIRSQSSPLGDASQRLAHFFANALEARLQGSSGGTIQSYyDSVTSKKRTAAQILKSYKTFLSASPFMTLMYFYSN 401 689*************************************************6655555553888888888********************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrv 196 ++Il+a++ ++ +HiiDf+i +G+QWp ++q +++ + gp +lRiT+v+ p++g +e+le tg+rL+++++++gvpfe+n++++k++e++ lee+++ RrC240_p10 402 KMILDAAKDASVLHIIDFGILYGFQWPMFIQRISKSKTGPRKLRITAVELPQNGfrPTENLEDTGRRLREYCKRFGVPFEYNAIASKNWETIPLEEFKI 500 *************************************************9**************************99********* PP GRAS 197 kpgEalaVnlvlqlhrlldesvsles.erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294 +p+E+laVn vl+ ++l d + e+ +r+ +Lkl+++++P+v+ + + + n++ F +rf eal +y+a+fd++ ++l+re+ er+ E+++ gre+ RrC240_p10 501 RPNEVLAVNAVLRFKNLRDVTPGEEDcPREGFLKLIRDMKPDVFLNSTVNGSFNASFFTTRFKEALFHYTAVFDMFGSTLSRENPERVHFEEVFYGREV 599 **************9999999889******************************************************************* PP GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaW 373 +nv+aceg +r+er et+++W+ r+ +aGFk+ p++ + +++ + ++k + + + ++++s+++++gWk+r L+s S+W RrC240_p10 600 MNVIACEGVDRVERPETYKQWQVRMVRAGFKQKPVEAELVESFRVKMKKWGyHKDFVLDQDSNWFLQGWKGRILFSSSCW 679 ********************************************9999999*********************** PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.973	276	659	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-102	303	679	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 682 aa Download sequence Send to blast
MEPNFSGMVN GYEYYYDVSF LPNQIPNLGF GVPSSSDFDL RLDRIQIQPS IWVPSTQQDQ 60 DQDQDQDSPP AADEIDSENT LLKYVNQLLM EEETLAENQS MSYDSLALRQ TEEMLQQVIT 120 DSQTQSPYII SPSSNIISSS SCSSSGGGEC LNSNSDSCVW LKTITNSTGV LSFQGPNMLP 180 RFRQPANEIM FSDTNSVMQF KRGLEEASKF LPNTDQWIFN QYEKGHLSRV RKNHHEREEE 240 GEARSSKQSA VNVDDGKLTE MFDKVLLLDG EYDPQVIEEG DNVSSKSPSS KILLERGQDV 300 DFRTLLILCA QSISIGDMIT SHDLLKQIRS QSSPLGDASQ RLAHFFANAL EARLQGSSGG 360 TIQSYYDSVT SKKRTAAQIL KSYKTFLSAS PFMTLMYFYS NKMILDAAKD ASVLHIIDFG 420 ILYGFQWPMF IQRISKSKTG PRKLRITAVE LPQNGFRPTE NLEDTGRRLR EYCKRFGVPF 480 EYNAIASKNW ETIPLEEFKI RPNEVLAVNA VLRFKNLRDV TPGEEDCPRE GFLKLIRDMK 540 PDVFLNSTVN GSFNASFFTT RFKEALFHYT AVFDMFGSTL SRENPERVHF EEVFYGREVM 600 NVIACEGVDR VERPETYKQW QVRMVRAGFK QKPVEAELVE SFRVKMKKWG YHKDFVLDQD 660 SNWFLQGWKG RILFSSSCWV PS

Sequence ? help Back to Top

Protein Sequence Length: 682 aa Download sequence Send to blast

MEPNFSGMVN GYEYYYDVSF LPNQIPNLGF GVPSSSDFDL RLDRIQIQPS IWVPSTQQDQ  60
DQDQDQDSPP AADEIDSENT LLKYVNQLLM EEETLAENQS MSYDSLALRQ TEEMLQQVIT  120
DSQTQSPYII SPSSNIISSS SCSSSGGGEC LNSNSDSCVW LKTITNSTGV LSFQGPNMLP  180
RFRQPANEIM FSDTNSVMQF KRGLEEASKF LPNTDQWIFN QYEKGHLSRV RKNHHEREEE  240
GEARSSKQSA VNVDDGKLTE MFDKVLLLDG EYDPQVIEEG DNVSSKSPSS KILLERGQDV  300
DFRTLLILCA QSISIGDMIT SHDLLKQIRS QSSPLGDASQ RLAHFFANAL EARLQGSSGG  360
TIQSYYDSVT SKKRTAAQIL KSYKTFLSAS PFMTLMYFYS NKMILDAAKD ASVLHIIDFG  420
ILYGFQWPMF IQRISKSKTG PRKLRITAVE LPQNGFRPTE NLEDTGRRLR EYCKRFGVPF  480
EYNAIASKNW ETIPLEEFKI RPNEVLAVNA VLRFKNLRDV TPGEEDCPRE GFLKLIRDMK  540
PDVFLNSTVN GSFNASFFTT RFKEALFHYT AVFDMFGSTL SRENPERVHF EEVFYGREVM  600
NVIACEGVDR VERPETYKQW QVRMVRAGFK QKPVEAELVE SFRVKMKKWG YHKDFVLDQD  660
SNWFLQGWKG RILFSSSCWV PS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	1e-45	306	679	8	374	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013602757.1	0.0	PREDICTED: scarecrow-like protein 31
Refseq	XP_013602758.1	0.0	PREDICTED: scarecrow-like protein 31
Refseq	XP_013602759.1	0.0	PREDICTED: scarecrow-like protein 31
Swissprot	Q3EDH0	0.0	SCL31_ARATH; Scarecrow-like protein 31
TrEMBL	A0A397Y7V7	0.0	A0A397Y7V7_BRACM; Uncharacterized protein
STRING	Bra031581.1-P	0.0	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13511	17	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07520.1	0.0	GRAS family protein