PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC2430_p3
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 90aa    MW: 10574 Da    PI: 9.5356
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC2430_p3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.46.9e-081756246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g +++eEd ++  +++  G++       ++  gRt++++k++w++
       RrC2430_p3 17 GDFSEEEDNIICSLFASIGSR----LETHLH-GRTDNDIKNYWNT 56
                     789****************99....555***.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-9122IPR009057Homeodomain-like
SuperFamilySSF466892.28E-14162IPR009057Homeodomain-like
PROSITE profilePS5129415.1651162IPR017930Myb domain
SMARTSM007170.00121560IPR001005SANT/Myb domain
PfamPF002492.4E-61756IPR001005SANT/Myb domain
CDDcd001674.46E-41958No hitNo description
Gene3DG3DSA:1.10.10.604.6E-122359IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
SCRLRWLNYL RPNIRHGDFS EEEDNIICSL FASIGSRLET HLHGRTDNDI KNYWNTKLKK  60
KLIATMAPPP PHQLWVKYNK YSNKSEDGTT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator (By similarity). Positively regulates axillary meristems (AMs) formation and development, especially during inflorescence. {ECO:0000250, ECO:0000269|PubMed:16461581}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ6701185e-88KJ670118.1 Brassica napus MYB transcription factor 38 (MYB38.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018439280.15e-44PREDICTED: transcription factor RAX2
SwissprotQ9SJL74e-40RAX2_ARATH; Transcription factor RAX2
TrEMBLA0A078H3J03e-41A0A078H3J0_BRANA; BnaC04g08340D protein
TrEMBLA0A0D3BRD13e-41A0A0D3BRD1_BRAOL; Uncharacterized protein
STRINGBo4g031070.15e-42(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.12e-42MYB family protein
Publications ? help Back to Top
  1. Guo D, et al.
    The WRKY Transcription Factor WRKY71/EXB1 Controls Shoot Branching by Transcriptionally Regulating RAX Genes in Arabidopsis.
    Plant Cell, 2015. 27(11): p. 3112-27
    [PMID:26578700]