PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24410_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 209aa    MW: 23761.7 Da    PI: 10.1947
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24410_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.43e-142584097
                 ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97
                 +e+g+sW++ l+   +sgr+++++GW++F+ ang k gD++ Fkl++ + +++v+k+f
  RrC24410_p1  2 NEKGESWTIDLRRVSYSGRFLMRRGWRSFCAANGKKPGDMFSFKLIQ-NVETPVLKLF 58
                 89*********999********************************9.5556788877 PP
2B3551.5e-171232081299
                  HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  +++ l lp +f++ +g+kk+e  ++++ d+ g +W+  l ++kk+++ ++l+kG k+F++ ng+k g+++v++l++ +++ +v+k+++k
  RrC24410_p1 123 TTSKLNLPLEFTKGNGIKKAE--KMKMIDRYGTKWSTSLLMNKKRRGaMTLGKGCKGFCEVNGIKMGESFVLELVW-EDTVPVLKFCSK 208
                  445699**********99877..79**************996666666****************************.788899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.014161IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493161IPR003340B3 DNA binding domain
PfamPF023628.1E-12158IPR003340B3 DNA binding domain
CDDcd100171.71E-10159No hitNo description
SuperFamilySSF1019361.84E-11257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.2E-11256IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.77112208IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-17114208IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.9E-17114208IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.6E-20117209IPR003340B3 DNA binding domain
CDDcd100172.67E-12117207No hitNo description
PfamPF023629.8E-16123208IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MNEKGESWTI DLRRVSYSGR FLMRRGWRSF CAANGKKPGD MFSFKLIQNV ETPVLKLFPL  60
NLPKLEPSND KRQGIEATEK EFLGAEPTNE AIRKRKCSEA NETTIKEENI TTGENRFVTL  120
TLTTSKLNLP LEFTKGNGIK KAEKMKMIDR YGTKWSTSLL MNKKRRGAMT LGKGCKGFCE  180
VNGIKMGESF VLELVWEDTV PVLKFCSKC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437424.11e-142PREDICTED: B3 domain-containing protein REM10-like
SwissprotP0DH856e-84REM10_ARATH; B3 domain-containing protein REM10
TrEMBLA0A397Y2Q01e-122A0A397Y2Q0_BRACM; Uncharacterized protein
STRINGBo8g099610.11e-120(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.17e-82B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]