PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC2455_p2

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

WOX

Protein Properties

Length: 207aa MW: 23224.7 Da PI: 6.3995

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC2455_p2	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.8	1.2e-20	80	140	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t++ql++Le+ +e+ + +p++++++e+A++l ++te++V++WFqNrRa+ k+ RrC2455_p2 80 RNRWTPTSTQLQILESIYEErSGTPNRRRIREIAAELsehgQITETNVYNWFQNRRARSKR 140 89***************98************************************97 PP
2	Wus_type_Homeobox	96.6	2e-31	79	142	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtPt++Q++iLe++y++ tPn+++i++i+aeL+e+G+i+++NV++WFQNr+aR+++kq RrC2455_p2 79 TRNRWTPTSTQLQILESIYEERSGTPNRRRIREIAAELSEHGQITETNVYNWFQNRRARSKRKQ 142 689***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.9E-16	74	144	IPR009057	Homeodomain-like
PROSITE profile	PS50071	15.046	76	141	IPR001356	Homeobox domain
SMART	SM00389	3.0E-14	78	145	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.56E-18	78	142	IPR009057	Homeodomain-like
CDD	cd00086	5.57E-15	80	142	No hit	No description
Pfam	PF00046	2.4E-18	80	140	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001944	Biological Process	vasculature development
GO:0010072	Biological Process	primary shoot apical meristem specification
GO:0051301	Biological Process	cell division
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEKESQNGAY VGRGVMTEEQ METLRKQIAV YAVICEQLAL LHNSLSSFHP LSSGMNPNGG 60 GYFDPMVVAS SSAHQRISTR NRWTPTSTQL QILESIYEER SGTPNRRRIR EIAAELSEHG 120 QITETNVYNW FQNRRARSKR KQTPHTTTTD TGPAEDAAVV TTDEKRSCGD SGGFESYEHI 180 LFPSPDLGIE HLLSRGELSG EFNSYRL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	133	141	RRARSKRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189247	1e-129	AC189247.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB018K09, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018482212.1	1e-154	PREDICTED: WUSCHEL-related homeobox 14-like
Swissprot	Q9LM84	1e-109	WOX14_ARATH; WUSCHEL-related homeobox 14
TrEMBL	A0A0D3CBV0	1e-129	A0A0D3CBV0_BRAOL; Uncharacterized protein
TrEMBL	A0A397YXH0	1e-129	A0A397YXH0_BRACM; Uncharacterized protein
TrEMBL	M4EAN0	1e-129	M4EAN0_BRARP; Uncharacterized protein
STRING	Bra025839.1-P	1e-130	(Brassica rapa)
STRING	Bo5g030590.1	1e-130	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12211	17	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G20700.1	1e-108	WUSCHEL related homeobox 14

Publications ? help Back to Top
Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997]