PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RrC24660_p1

Organism

Raphanus raphanistrum

Taxonomic ID

109996

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 221aa MW: 25397.8 Da PI: 7.5886

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RrC24660_p1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	28.4	3.7e-09	2	52	12	62
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 12 kNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 NR +A rs +RK +i eLe+kv++L++e ++L +l+ + l se RrC24660_p1 2 ANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLSLFQRDTTGLSSE 52 6**********************************9999887776666666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50217	9.438	1	56	IPR004827	Basic-leucine zipper domain
SMART	SM00338	3.4E-7	1	55	IPR004827	Basic-leucine zipper domain
CDD	cd14703	3.61E-17	1	45	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.2E-9	2	50	No hit	No description
SuperFamily	SSF57959	1.27E-8	2	46	No hit	No description
Pfam	PF00170	2.5E-7	2	53	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MANRQSAARS KERKARYIME LERKVQSLQT EATTLSAQLS LFQRDTTGLS SENTELKLRL 60 QVMEQQAKLR DALNDQLKKE VERLKFATGE VSHADAYNLG MAHMQYSQQQ QQQPQQQQQQ 120 QSFFQHHHHH HQQQQQQTDA QNIQQMTHQF HLFQPNNNHN QNQNPQLMHH ATSNASGQSH 180 SFAEAMHEDH LGRLQGLDIS SCGRGSNFGR SDTVSESSST M

Functional Description ? help Back to Top
Source	Description
UniProt	Transcrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269\|PubMed:27896439}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY074269	1e-111	AY074269.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	AY096746	1e-111	AY096746.1 Arabidopsis thaliana putative bZIP transcription factor (At2g40620) mRNA, complete cds.
GenBank	Z86093	1e-111	Z86093.1 A.thaliana mRNA for b-Zip DNA binding protein.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_181594.1	1e-119	Basic-leucine zipper (bZIP) transcription factor family protein
Swissprot	O22873	1e-120	BZP18_ARATH; bZIP transcription factor 18
TrEMBL	A0A178VZR1	1e-117	A0A178VZR1_ARATH; Uncharacterized protein
STRING	AT2G40620.1	1e-118	(Arabidopsis thaliana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4042	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40620.1	7e-63	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Pawar V, et al. A novel family of plant nuclear envelope-associated proteins. J. Exp. Bot., 2016. 67(19): p. 5699-5710 [PMID:27630107] Gibalová A, et al. Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte. Plant Reprod, 2017. 30(1): p. 1-17 [PMID:27896439] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S Efficient gene tagging in Arabidopsis thaliana using a gene trap approach. Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7 [PMID:9356517]