PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC24679_p1
Organism
Raphanus raphanistrum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 161aa    MW: 18368.1 Da    PI: 8.9695
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC24679_p1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.6e-183079254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54
                  y+GVr ++ +g+++AeIrd + ng   r++lg+f+ aeeAa a+++a+ + +
  RrC24679_p1 30 SYRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAFATK 79
                 69*******.**********44465..*********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.40E-292989No hitNo description
SMARTSM003806.6E-363094IPR001471AP2/ERF domain
PROSITE profilePS5103221.9313088IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-293089IPR001471AP2/ERF domain
PfamPF008478.2E-123077IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-223090IPR016177DNA-binding domain
PRINTSPR003672.2E-103142IPR001471AP2/ERF domain
PRINTSPR003672.2E-105470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
MMIKEESQNA DVSNSEEEEK IGSVIDEEKS YRGVRKRPWG KFAAEIRDST RNGIRVWLGT  60
FDKAEEAALA YDQAAFATKG SLAVLNFPVE VVRESLKKME NVNLEDGGSP ILALKRKHSL  120
RNRPRGKRDL ILFLVLLIHL PQHLLLPHLQ HQDQEMISRV L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-282991163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-282991466ATERF1
3gcc_A5e-282991466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894331e-129AC189433.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB068H20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481294.14e-89PREDICTED: ethylene-responsive transcription factor 15-like
SwissprotQ8VYM08e-81ERF93_ARATH; Ethylene-responsive transcription factor 15
TrEMBLA0A078FRC81e-81A0A078FRC8_BRANA; BnaC04g42060D protein
TrEMBLA0A0D3C3D61e-81A0A0D3C3D6_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CUU69e-82A0A3P6CUU6_BRAOL; Uncharacterized protein
STRINGBo4g176080.12e-82(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM39901859
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31230.13e-70ethylene-responsive element binding factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhang H, et al.
    Arabidopsis AtERF15 positively regulates immunity against Pseudomonas syringae pv. tomato DC3000 and Botrytis cinerea.
    Front Plant Sci, 2015. 6: p. 686
    [PMID:26388886]